[Home] | [Total List]

[182962_at]

Description F40H3.2 /REP_DB=WormBase Gene ID /WP=CE19863 /TR=Q9TZK3 /GB=AAC67431.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_high_8_8 > 50      6grp_highest_nonorm > 52      6grp_total > 52      4grp_total > 53      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 380
1 2 3 4 range
A 433.1
(3)
P 		392.2
(1.9)
P 		345.2
(0.6)
P 		211.5
(-3)
M 		222
B 475.7
(3)
P 		360.7
(1)
P 		358
(1)
P 		127.9
(-3)
P 		348
C 507.4
(3)
P 		377.5
(0.7)
P 		305.6
(-0.5)
P 		165.7
(-3)
P 		342
avr 472.1
(3) 		376.8
(1.1) 		336.3
(0.3) 		168.4
(-3) 		304

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1190
1 2 3 4 5 6 range
A 374.7
(-2.1)
P 		561.2
(-1.1)
P 		1380.6
(3)
P 		672.6
(-0.6)
P 		486.8
(-1.5)
P 		190.8
(-3)
P 		1190
B 423.2
(-2)
P 		661.8
(-0.7)
P 		1357.1
(3)
P 		487.5
(-1.7)
P 		470.1
(-1.8)
P 		243.1
(-3)
P 		1114
C 429.4
(-0.6)
P 		731.5
(3)
P 		703.8
(2.7)
P 		657.4
(2.1)
P 		418.8
(-0.8)
P 		231.7
(-3)
P 		500
avr 409.1
(-1.8) 		651.5
(-0.2) 		1147.2
(3) 		605.8
(-0.5) 		458.6
(-1.5) 		221.9
(-3) 		925
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 157.7
(3)
P 		85.1
(-0.4)
P 		90.2
(-0.2)
P 		31
(-3)
M 		127
B 151.7
(3)
P 		89.1
(-0)
P 		82.9
(-0.3)
P 		27.2
(-3)
P 		125
C 168
(3)
P 		108.5
(0.5)
P 		106.5
(0.4)
P 		27.9
(-3)
P 		140
avr 159.1
(3) 		94.2
(0) 		93.2
(-0) 		28.7
(-3) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 283
1 2 3 4 5 6 range
A 69.1
(-2.5)
P 		199.6
(0.6)
P 		300.7
(3)
P 		170.6
(-0.1)
P 		146.9
(-0.6)
P 		46.4
(-3)
P 		254
B 147.3
(-1.6)
P 		220.3
(0.3)
P 		329.5
(3)
P 		129.1
(-2)
P 		191
(-0.5)
P 		90.7
(-3)
P 		239
C 159.2
(0.4)
P 		223.2
(3)
P 		179.1
(1.2)
P 		132.2
(-0.8)
P 		135.5
(-0.6)
P 		77.6
(-3)
P 		146
avr 125.2
(-1.4) 		214.4
(1.3) 		269.8
(3) 		144
(-0.8) 		157.8
(-0.4) 		71.6
(-3) 		198
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182962_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4404
Sequence Type Exemplar sequence
Representative Public ID F40H3.2 NCBI
Target Description F40H3.2 /REP_DB=WormBase Gene ID /WP=CE19863 /TR=Q9TZK3 /GB=AAC67431.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062831(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062831 NCBI Caenorhabditis elegans F40H3.2 (F40H3.2) mRNA, complete cds. 10/11 None
GENEFINDER00000001577 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6173628:6174375:1 10/11 None
F40H3.2 ENSEMBL cdna:known chromosome:CEL140:II:6173602:6174396:1 gene:F40H3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6173624-6174424(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40H3.2
Entrez Gene 185571 Entrez gene
SwissProt Q9TZK3 EMBL-EBI
WormBase CE35530 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67431 Hypothetical protein F40H3.2 [Caenorhabditis elegans] ref|NP_495232.2| F40H3.2 [Caenorhabditis elegans] 3.0E-44
blast CAE59257 Hypothetical protein CBG02585 [Caenorhabditis briggsae] 5.0E-21
Sequence
Target Sequence 
>C. ELEGANS:182962_AT
atgaatcttccgttaaccttgatatttgtttctgttctaatatcactggtctcgtcgctt
ggagaacttcctgaaaatacagaatctgctgaagatgctgcatttgttctgaactcagga
gattttagaagggatgaaggggaagatgtcacagttattgatggtccaactccgccatct
gtagttgctgctccactagatccacttccagaaatgagcattccagtttccgtccacccc
cttctttcaaatcaaaaaaggattctggggagcatgcggagccgtcaaatgttgggttcg
tcgttcgtcgtggtcgagcaaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAATCTTCCGTTAACCTTGATAT 510 43 13 Antisense
ACCTTGATATTTGTTTCTGTTCTAA 309 87 28 Antisense
CTGTTCTAATATCACTGGTCTCGTC 672 239 44 Antisense
TGGTCTCGTCGCTTGGAGAACTTCC 525 551 59 Antisense
AGATGCTGCATTTGTTCTGAACTCA 304 67 105 Antisense
ATCTGTAGTTGCTGCTCCACTAGAT 336 33 189 Antisense
GAAATGAGCATTCCAGTTTCCGTCC 705 359 223 Antisense
AGGATTCTGGGGAGCATGCGGAGCC 28 57 271 Antisense
GCGGAGCCGTCAAATGTTGGGTTCG 165 293 288 Antisense
CAAATGTTGGGTTCGTCGTTCGTCG 429 191 298 Antisense
GTCGTTCGTCGTGGTCGAGCAAAAG 379 473 312 Antisense
Sequence Source Affymetrix Proprietary Database