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[182961_at]

Description R02D3.8 /REP_DB=WormBase Gene ID /WP=CE18102 /TR=Q9TZZ9 /GB=AAB94148.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 95      6grp_total > 76      4grp_total > 07      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 172.4
(-1.5)
P 		141.7
(-3)
A 		181.1
(-1.1)
P 		268.1
(3)
A 		126
B 257.2
(3)
P 		144.3
(-3)
P 		204.9
(0.2)
P 		161.7
(-2.1)
M 		113
C 173.3
(-2.7)
P 		200.3
(3)
P 		172
(-3)
P 		180.8
(-1.1)
A 		28
avr 201
(2.6) 		162.1
(-3) 		186
(0.5) 		203.5
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 411
1 2 3 4 5 6 range
A 193.2
(-3)
A 		236.9
(-2)
P 		307.7
(-0.4)
P 		243.8
(-1.9)
P 		331.7
(0.1)
P 		461.7
(3)
P 		269
B 177.1
(-2.5)
P 		142.5
(-3)
P 		309.4
(-0.6)
P 		274
(-1.1)
P 		344.7
(-0)
P 		553.6
(3)
P 		411
C 146.7
(-3)
P 		205.6
(-1.9)
P 		229.6
(-1.5)
P 		420
(2)
P 		220.5
(-1.6)
P 		472.8
(3)
P 		326
avr 172.3
(-3) 		195
(-2.6) 		282.2
(-1) 		312.6
(-0.4) 		299
(-0.7) 		496
(3) 		324
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 62.8
(3)
P 		30.8
(-3)
A 		47.3
(0.1)
P 		39.2
(-1.4)
A 		32
B 82
(3)
P 		35.6
(-2.9)
P 		47.5
(-1.4)
P 		34.5
(-3)
M 		48
C 57.4
(2.5)
P 		57.6
(2.5)
P 		60
(3)
P 		30.5
(-3)
A 		30
avr 67.4
(3) 		41.3
(-1.8) 		51.6
(0.1) 		34.7
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 35.6
(-3)
A 		84.3
(0.8)
P 		67
(-0.5)
P 		61.8
(-1)
P 		100.1
(2)
P 		112.4
(3)
P 		77
B 61.6
(-2.5)
P 		47.4
(-3)
P 		75.1
(-2)
P 		72.6
(-2)
P 		140
(0.5)
P 		206.4
(3)
P 		159
C 54.4
(-3)
P 		62.7
(-2.5)
P 		58.4
(-2.8)
P 		84.5
(-1.3)
P 		71.4
(-2)
P 		158.3
(3)
P 		104
avr 50.5
(-3) 		64.8
(-2.2) 		66.8
(-2.1) 		73
(-1.8) 		103.8
(-0.1) 		159
(3) 		109
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182961_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10486
Sequence Type Exemplar sequence
Representative Public ID R02D3.8 NCBI
Target Description R02D3.8 /REP_DB=WormBase Gene ID /WP=CE18102 /TR=Q9TZZ9 /GB=AAB94148.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067486(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067486 NCBI Caenorhabditis elegans R02D3.8 (R02D3.8) mRNA, complete cds. 11/11 A 
R02D3.8 ENSEMBL cdna:known chromosome:CEL140:IV:255989:257189:-1 gene:R02D3.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:256056-257189(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R02D3.8
Entrez Gene 176845 Entrez gene
SwissProt Q9TZZ9 EMBL-EBI
WormBase CE18102 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.8156.1.S1_S_AT similar to prion protein interacting protein 1 cfa
CHICKEN:GGA.18185.1.S1_AT prion protein interacting protein gga
HG-U133A:208973_AT prion protein interacting protein hs
HG-U133A_2:208973_AT prion protein interacting protein hs
HG-U133_PLUS_2:208973_AT prion protein interacting protein hs
HU35KSUBA:RC_AA423841_F_AT prion protein interacting protein hs
HU35KSUBA:AA401850_AT prion protein interacting protein hs
HU35KSUBD:RC_T03526_AT prion protein interacting protein hs
HU35KSUBD:RC_F04143_F_AT prion protein interacting protein hs
U133_X3P:G12654484_3P_AT prion protein interacting protein hs
HG-U95AV2:39772_AT prion protein interacting protein hs
HG-U133_PLUS_2:231605_AT Prion protein interacting protein hs
HG-U133B:231605_AT Prion protein interacting protein hs
HG-U95C:53412_AT Prion protein interacting protein hs
HG-U95C:61014_AT Prion protein interacting protein hs
HG-U95E:67991_AT Prion protein interacting protein hs
HG-U95E:82993_AT Prion protein interacting protein hs
HU35KSUBA:AA180073_AT Prion protein interacting protein hs
HU35KSUBD:RC_AA347247_AT Prion protein interacting protein hs
U133_X3P:HS.147257.0.A1_3P_AT Prion protein interacting protein hs
MOE430A:1427761_AT prion protein interacting protein 1 mm
MOUSE430A_2:1427761_AT prion protein interacting protein 1 mm
MOUSE430_2:1427761_AT prion protein interacting protein 1 mm
MOUSE430A_2:1425265_A_AT prion protein interacting protein 1 mm
MOE430A:1425265_A_AT prion protein interacting protein 1 mm
MOUSE430_2:1425265_A_AT prion protein interacting protein 1 mm
MG-U74CV2:135060_F_AT prion protein interacting protein 1 mm
MG-U74BV2:164896_F_AT prion protein interacting protein 1 mm
MG-U74BV2:162681_AT prion protein interacting protein 1 mm
MG-U74CV2:168353_F_AT prion protein interacting protein 1 mm
MG-U74CV2:167362_R_AT prion protein interacting protein 1 mm
MU19KSUBC:TC36622_AT Prion protein interacting protein 1 (Prnpip1), mRNA mm
MU19KSUBC:TC36814_AT Prion protein interacting protein 1 (Prnpip1), mRNA mm
MU19KSUBC:TC36814_G_AT Prion protein interacting protein 1 (Prnpip1), mRNA mm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4527 exonuclease activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB94148 Hypothetical protein R02D3.8 [Caenorhabditis elegans] ref|NP_499887.1| R02D3.8 [Caenorhabditis elegans] 1.0E-156
blast AAB09126 Hypothetical protein M02B7.2 [Caenorhabditis elegans] ref|NP_500418.1| M02B7.2 [Caenorhabditis elegans] 1.0E-141
blast CAE65673 Hypothetical protein CBG10739 [Caenorhabditis briggsae] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR006055 EMBL-EBI Exonuclease 7.5E-43
Sequence
Target Sequence 
>C. ELEGANS:182961_AT
aaaggcttctgcggagcacacaaatcatttcgcgaaaggaatagcccagcttctggccat
ctacaagctgcaacatcagggtcgccaccacagtggaattgatgacgtggcaaatatctg
cgaaattgtccggtgtttgggcatgaacgggcacaactatcaaatcacaggctccaaaga
cacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGGCTTCTGCGGAGCACACAAAT 512 121 594 Antisense
TTCGCGAAAGGAATAGCCCAGCTTC 399 697 622 Antisense
AAGGAATAGCCCAGCTTCTGGCCAT 546 159 629 Antisense
TTCTGGCCATCTACAAGCTGCAACA 485 693 644 Antisense
ACAAGCTGCAACATCAGGGTCGCCA 273 113 656 Antisense
ATCAGGGTCGCCACCACAGTGGAAT 210 25 668 Antisense
GGGTCGCCACCACAGTGGAATTGAT 502 497 672 Antisense
AAATTGTCCGGTGTTTGGGCATGAA 256 113 716 Antisense
GTTTGGGCATGAACGGGCACAACTA 37 451 728 Antisense
GGCACAACTATCAAATCACAGGCTC 446 535 743 Antisense
CAAATCACAGGCTCCAAAGACACAA 240 193 754 Antisense
Sequence Source Affymetrix Proprietary Database