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[182959_s_at]

Description F56A6.4 /REP_DB=WormBase Gene ID /WP=CE28462 /TR=Q9GZG5 /GB=AAF99975.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 86      6grp_total > 87      4grp_total > 01      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 271
1 2 3 4 range
A 122.8
(-2.1)
A 		102.1
(-3)
A 		110.1
(-2.6)
A 		234.4
(3)
P 		132
B 131.3
(-1.9)
M 		82.5
(-3)
A 		144.2
(-1.6)
A 		349.5
(3)
P 		267
C 157.3
(-0.4)
M 		79
(-3)
A 		141
(-0.9)
A 		260.4
(3)
P 		181
avr 137.1
(-1.5) 		87.9
(-3) 		131.8
(-1.6) 		281.4
(3) 		194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 619
1 2 3 4 5 6 range
A 121.2
(-3)
A 		130.7
(-2.9)
A 		232.4
(-1.3)
P 		238.2
(-1.2)
P 		328.1
(0.2)
P 		512
(3)
P 		391
B 145.3
(-3)
P 		229.5
(-2)
P 		218
(-2.1)
P 		283.5
(-1.3)
P 		345.8
(-0.5)
P 		631.2
(3)
P 		486
C 110.6
(-3)
P 		186.9
(-2.3)
P 		213.8
(-2)
M 		226.8
(-1.9)
P 		332.4
(-0.8)
P 		729.2
(3)
P 		619
avr 125.7
(-3) 		182.4
(-2.3) 		221.4
(-1.8) 		249.5
(-1.5) 		335.4
(-0.5) 		624.1
(3) 		498
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 44.7
(3)
A 		22.2
(-3)
A 		28.8
(-1.2)
A 		34.3
(0.2)
P 		23
B 41.9
(-0.6)
M 		20.4
(-3)
A 		33.4
(-1.6)
A 		74.5
(3)
P 		54
C 52.1
(3)
M 		22.7
(-3)
A 		49.1
(2.4)
A 		43.9
(1.3)
P 		29
avr 46.2
(2) 		21.8
(-3) 		37.1
(0.2) 		50.9
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 22.3
(-3)
A 		46.5
(-1.6)
A 		50.6
(-1.3)
P 		60.4
(-0.8)
P 		99
(1.5)
P 		124.6
(3)
P 		102
B 50.6
(-3)
P 		76.4
(-2.2)
P 		52.9
(-2.9)
P 		75.1
(-2.2)
P 		140.5
(-0.1)
P 		235.4
(3)
P 		185
C 41
(-3)
P 		57
(-2.5)
P 		54.4
(-2.6)
M 		45.6
(-2.9)
P 		107.5
(-1)
P 		244.1
(3)
P 		203
avr 38
(-3) 		60
(-2.2) 		52.6
(-2.5) 		60.4
(-2.2) 		115.7
(-0.1) 		201.4
(3) 		163
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182959_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2580
Sequence Type Exemplar sequence
Representative Public ID F56A6.4 NCBI
Target Description F56A6.4 /REP_DB=WormBase Gene ID /WP=CE28462 /TR=Q9GZG5 /GB=AAF99975.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058356(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058356 NCBI Caenorhabditis elegans F56A6.4 (F56A6.4) mRNA, complete cds. 9/11 None
F56A6.4 ENSEMBL cdna:known chromosome:CEL140:I:614726:629447:-1 gene:F56A6.4 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000032367 7/11 Cross Hyb Matching Probes None
GENEFINDER00000032364 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:614725-616081(-) 88.83 100.0
Public Domain and Genome References
Gene Title
Ensembl F56A6.4
Entrez Gene 171652 Entrez gene
SwissProt Q9GZG5 EMBL-EBI
WormBase CE34319 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99975 Hypothetical protein F56A6.4 [Caenorhabditis elegans] ref|NP_490757.2| F56A6.4 [Caenorhabditis elegans] 0.0
blast T33081 hypothetical protein F56A6.4 - Caenorhabditis elegans 4.0E-81
blast CAE61312 Hypothetical protein CBG05147 [Caenorhabditis briggsae] 2.0E-36
Sequence
Target Sequence 
>C. ELEGANS:182959_S_AT
aaacgatcgccgagctggcactattcactgctcagtacttgagaagtttggcgagacagg
agaagaagaagctcgacgctggaagtgatgggggcggtggtggtggtgcaggaggggcag
gaggccacaaattacagtatcagggggataaggttgggtcttggcgcgaaatctgcagaa
atctggtctcgacgcgacattttttttttttaaaacacaaacggggaattgtgatcggaa
gtcgctcggaaatcgtcacggattggtggtcgaaaatgctcacaacaatcgatcggctgt
cggatgctcagcgacgtgcaattctcgaactaatccctgatccgattgccgcaatcgata
aatactcgaaaatggactactcgctcgctattcaagagattggcgaacttgtggcagaga
acgggagacgtgttggaccgtcgatggctcatcgtatacttacaatgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACGATCGCCGAGCTGGCACTATT 290 127 119 Antisense
GGCACTATTCACTGCTCAGTACTTG 417 535 135 Antisense
TAAGGTTGGGTCTTGGCGCGAAATC 362 625 267 Antisense
TGCAGAAATCTGGTCTCGACGCGAC 87 579 292 Antisense
GATCGGAAGTCGCTCGGAAATCGTC 633 381 351 Antisense
ACAATCGATCGGCTGTCGGATGCTC 230 113 403 Antisense
GGATGCTCAGCGACGTGCAATTCTC 402 513 420 Antisense
ATTCTCGAACTAATCCCTGATCCGA 191 11 439 Antisense
CGAAAATGGACTACTCGCTCGCTAT 170 253 485 Antisense
GAGACGTGTTGGACCGTCGATGGCT 579 387 543 Antisense
GGCTCATCGTATACTTACAATGCTC 297 539 564 Antisense
Sequence Source Affymetrix Proprietary Database