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[182958_at] 7TM chemoreceptor, srsx family

Description C13D9.4 /REP_DB=WormBase Gene ID /WP=CE08137 /TR=O16238 /GB=AAB65307.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 26      6grp_cgc > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 1.2
(-3)
A 		12
(-0.7)
A 		29.1
(3)
A 		25.2
(2.2)
A 		28
B 6.6
(-1.7)
A 		21
(2)
A 		1.7
(-3)
A 		24.7
(3)
A 		23
C 29.6
(1.4)
A 		30.4
(1.6)
A 		11.1
(-3)
A 		36.3
(3)
A 		25
avr 12.5
(-3) 		21.1
(0.2) 		14
(-2.4) 		28.7
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 7.3
(1.9)
A 		1.1
(-3)
A 		8.7
(3)
A 		1.9
(-2.4)
A 		2.2
(-2.1)
A 		2.2
(-2.1)
A 		8
B 38.8
(3)
A 		2.9
(-3)
A 		4.2
(-2.8)
A 		4
(-2.8)
A 		18.2
(-0.4)
A 		12.8
(-1.3)
A 		36
C 5.2
(-2)
A 		26.6
(3)
A 		1.7
(-2.8)
A 		2.1
(-2.7)
A 		13.2
(-0.1)
A 		1
(-3)
A 		26
avr 17.1
(3) 		10.2
(0.1) 		4.9
(-2.1) 		2.7
(-3) 		11.2
(0.5) 		5.3
(-1.9) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.4
(-3)
A 		2.6
(-1.2)
A 		7.6
(3)
A 		3.7
(-0.3)
A 		7
B 2.1
(-0.9)
A 		5.2
(2.9)
A 		0.4
(-3)
A 		5.3
(3)
A 		5
C 9.8
(3)
A 		8.7
(1.9)
A 		3.9
(-3)
A 		6.1
(-0.8)
A 		6
avr 4.1
(-2.6) 		5.5
(3) 		4
(-3) 		5
(1) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.4
(1)
A 		0.4
(-3)
A 		1.9
(3)
A 		0.5
(-2.6)
A 		0.7
(-1.8)
A 		0.5
(-2.6)
A 		2
B 13.5
(3)
A 		1
(-3)
A 		1
(-3)
A 		1.1
(-3)
A 		7.4
(0.1)
A 		4.8
(-1.2)
A 		13
C 1.9
(-1.8)
A 		8.1
(3)
A 		0.4
(-2.9)
A 		0.4
(-2.9)
A 		4.3
(0.1)
A 		0.3
(-3)
A 		8
avr 5.6
(3) 		3.2
(0.1) 		1.1
(-2.5) 		0.7
(-3) 		4.1
(1.2) 		1.9
(-1.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182958_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14860
Sequence Type Exemplar sequence
Representative Public ID C13D9.4 NCBI
Target Description C13D9.4 /REP_DB=WormBase Gene ID /WP=CE08137 /TR=O16238 /GB=AAB65307.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071937(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071937 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-11) (srsx-11) mRNA, complete cds. 10/11 None
C13D9.4 ENSEMBL cdna:known chromosome:CEL140:V:4977611:4978974:-1 gene:C13D9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4977610-4978974(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srsx family
Gene Symbol srsx-11
Ensembl C13D9.4
Entrez Gene 182572 Entrez gene
SwissProt O16238 EMBL-EBI
WormBase CE38148 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65307 Serpentine receptor, class sx protein 11 [Caenorhabditis elegans] ref|NP_504338.2| Serpentine Receptor, class SX family member (srsx-11) [Caenorhabditis elegans] 1.0E-168
blast AAB65307 Serpentine receptor, class sx protein 11 [Caenorhabditis elegans] ref|NP_504338.2| Serpentine Receptor, class SX family member (srsx-11) [Caenorhabditis elegans] 1.0E-127
blast NP_504336 Serpentine Receptor, class SX family member (srsx-9) [Caenorhabditis elegans] gb|AAC48042.2| Hypothetical protein F26G5.10 [Caenorhabditis elegans] 3.0E-87
blast CAE64035 Hypothetical protein CBG08632 [Caenorhabditis briggsae] 2.0E-73
blast NP_504336 Serpentine Receptor, class SX family member (srsx-9) [Caenorhabditis elegans] gb|AAC48042.2| Hypothetical protein F26G5.10 [Caenorhabditis elegans] 1.0E-68
blast NP_001023863 Serpentine Receptor, class SX family member (srsx-10) [Caenorhabditis elegans] gb|AAX22288.1| Hypothetical protein F26G5.12 [Caenorhabditis elegans] 5.0E-58
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504338.2 6 10-32,84-106,121-143,168-190,205-227,239-261
C13D9.4 5 10-32,84-106,121-143,168-190,205-227
Sequence
Target Sequence 
>C. ELEGANS:182958_AT
tttcgtgaagttcccaactttctatagaaatatctcgaaatcccaatacatttttgtgac
aacctttccagttattacttgctctattatcattacagtttacggttatactgcaacaaa
tgaggactggattcccgcgtgtactccgggatttgcatttaccattgaagcaagccgaat
ttacaaactttttatactccttatgagtgtttttgtcactgtgatatatgctgttctgat
tagaactttttatttaaaaggacatcacgagaattcaagttcattaaagaccatgaaacg
tcttcagttttccgtgggaattttcatttttacatggttctttagccaaattttcggact
gatcattcttcaaatgacagagtatactgcatttgaagcgagtctattcgcgcataacgt
cgttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCGTGAAGTTCCCAACTTTCTAT 320 671 327 Antisense
GAAATATCTCGAAATCCCAATACAT 337 363 353 Antisense
GACAACCTTTCCAGTTATTACTTGC 570 319 384 Antisense
ATTACTTGCTCTATTATCATTACAG 419 13 400 Antisense
AAATGAGGACTGGATTCCCGCGTGT 629 119 444 Antisense
GTACTCCGGGATTTGCATTTACCAT 574 459 467 Antisense
CACTGTGATATATGCTGTTCTGATT 268 199 543 Antisense
TGAAACGTCTTCAGTTTTCCGTGGG 157 571 620 Antisense
GTTCTTTAGCCAAATTTTCGGACTG 121 443 663 Antisense
TTTTCGGACTGATCATTCTTCAAAT 42 675 677 Antisense
GTCTATTCGCGCATAACGTCGTTAA 548 467 728 Antisense
Sequence Source Affymetrix Proprietary Database