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[182957_at]

Description Y48E1B.6 /REP_DB=WormBase Gene ID /WP=CE14862 /TR=O18200 /GB=CAB07692.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 44      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 52.5
(0.1)
A 		43.6
(-3)
A 		51.4
(-0.3)
A 		60.9
(3)
A 		17
B 48.7
(2.7)
A 		51
(3)
A 		8.2
(-3)
A 		30.1
(0.1)
A 		43
C 28.5
(-3)
A 		47.2
(2.2)
A 		49.9
(3)
A 		30.4
(-2.5)
A 		21
avr 43.2
(0.7) 		47.3
(3) 		36.5
(-3) 		40.5
(-0.8) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 40.8
(3)
A 		25.9
(-0.1)
A 		18.3
(-1.7)
A 		12.3
(-3)
A 		22.5
(-0.9)
A 		17
(-2)
A 		29
B 33.2
(0.6)
A 		35.4
(1)
A 		23.9
(-0.9)
A 		47
(3)
A 		11.9
(-3)
A 		41.6
(2.1)
A 		35
C 2.2
(-3)
A 		34.2
(1.4)
A 		5.1
(-2.6)
A 		45.5
(3)
A 		2.1
(-3)
A 		3.4
(-2.8)
A 		43
avr 25.4
(0.5) 		31.8
(2.2) 		15.8
(-2) 		34.9
(3) 		12.2
(-3) 		20.7
(-0.8) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 19.1
(3)
A 		9.5
(-2.6)
A 		13.4
(-0.4)
A 		8.9
(-3)
A 		10
B 15.5
(3)
A 		12.6
(1.7)
A 		1.9
(-3)
A 		6.4
(-1)
A 		14
C 9.4
(-0.9)
A 		13.6
(1.1)
A 		17.4
(3)
A 		5.1
(-3)
A 		12
avr 14.7
(3) 		11.9
(0.9) 		10.9
(0.1) 		6.8
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 7.5
(1.3)
A 		9.2
(3)
A 		4
(-2.1)
A 		3.1
(-3)
A 		6.8
(0.6)
A 		4.1
(-2)
A 		6
B 11.6
(0.8)
A 		11.8
(0.9)
A 		5.8
(-2.4)
A 		12.5
(1.3)
A 		4.8
(-3)
A 		15.5
(3)
A 		11
C 0.8
(-2.9)
A 		10.4
(3)
A 		1.3
(-2.6)
A 		9.2
(2.3)
A 		0.7
(-3)
A 		1.2
(-2.7)
A 		10
avr 6.6
(-0.4) 		10.5
(3) 		3.7
(-3) 		8.3
(1.1) 		4.1
(-2.6) 		6.9
(-0.2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182957_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3222
Sequence Type Exemplar sequence
Representative Public ID Y48E1B.6 NCBI
Target Description Y48E1B.6 /REP_DB=WormBase Gene ID /WP=CE14862 /TR=O18200 /GB=CAB07692.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064450(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064450 NCBI Caenorhabditis elegans Y48E1B.6 (Y48E1B.6) mRNA, complete cds. 11/11 None
GENEFINDER00000010073 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13575827:13588739:1 11/11 None
Y48E1B.6 ENSEMBL cdna:known chromosome:CEL140:II:13575827:13576199:1 gene:Y48E1B.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010060 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13575823-13576196(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48E1B.6
Entrez Gene 190027 Entrez gene
SwissProt O18200 EMBL-EBI
WormBase CE14862 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07693 Hypothetical protein Y48E1B.7 [Caenorhabditis elegans] ref|NP_496852.1| Y48E1B.7 [Caenorhabditis elegans] 0.0
blast CAB07694 Hypothetical protein Y48E1B.8 [Caenorhabditis elegans] ref|NP_496853.1| Y48E1B.8 [Caenorhabditis elegans] 0.0
blast CAE73327 Hypothetical protein CBG20756 [Caenorhabditis briggsae] 1.0E-162
blast CAB07692 Hypothetical protein Y48E1B.6 [Caenorhabditis elegans] ref|NP_496851.1| Y48E1B.6 [Caenorhabditis elegans] 3.0E-35
blast CAE73328 Hypothetical protein CBG20757 [Caenorhabditis briggsae] 1.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR005069 EMBL-EBI Protein of unknown function DUF271 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000010073 2 822-841,870-892
Sequence
Target Sequence 
>C. ELEGANS:182957_AT
tcgaagaaatggacgcctaccctgctgtagatgactctggagaccaccttctcgacccga
atatgataccaaccgccgccacggaagtagtaatgtcgggagatggaattgagaggcaat
tcggcgacgaggaggacacctatcaatacgagtacacttatgaagacgatccgcagctgg
aaatcggagaggaagaggttgtggtgacggatgaagctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAAGAAATGGACGCCTACCCTGC 460 601 29 Antisense
TAGATGACTCTGGAGACCACCTTCT 474 651 56 Antisense
CCACCTTCTCGACCCGAATATGATA 364 273 72 Antisense
TCGACCCGAATATGATACCAACCGC 471 599 80 Antisense
CAACCGCCGCCACGGAAGTAGTAAT 682 185 98 Antisense
GCCACGGAAGTAGTAATGTCGGGAG 499 277 106 Antisense
TTCGGCGACGAGGAGGACACCTATC 162 695 148 Antisense
GGACACCTATCAATACGAGTACACT 575 525 162 Antisense
GAGTACACTTATGAAGACGATCCGC 637 397 178 Antisense
GACGATCCGCAGCTGGAAATCGGAG 259 379 193 Antisense
GAGGTTGTGGTGACGGATGAAGCTG 444 403 223 Antisense
Sequence Source Affymetrix Proprietary Database