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[182956_at]

Description F34D6.1 /REP_DB=WormBase Gene ID /WP=CE09908 /TR=O17183 /GB=AAC71152.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.6
(-3)
A 		5.6
(-0.6)
A 		5.7
(-0.6)
A 		10.2
(3)
A 		8
B 3.3
(-3)
A 		4.5
(-2.2)
A 		12.7
(3)
A 		7.1
(-0.6)
A 		9
C 2.2
(-3)
A 		12.9
(3)
A 		10.5
(1.7)
A 		6.7
(-0.5)
A 		11
avr 2.7
(-3) 		7.7
(1.3) 		9.6
(3) 		8
(1.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 6.7
(-2.5)
A 		4.2
(-3)
A 		7.1
(-2.4)
A 		5.7
(-2.7)
A 		6.9
(-2.4)
A 		33.1
(3)
A 		29
B 3.5
(-3)
A 		24.9
(3)
A 		6.9
(-2)
A 		10.1
(-1.1)
A 		3.5
(-3)
A 		8.7
(-1.5)
A 		21
C 3.4
(-3)
A 		5.3
(-1.9)
A 		14
(3)
A 		3.6
(-2.9)
A 		8.6
(-0.1)
A 		7
(-1)
A 		11
avr 4.5
(-3) 		11.5
(0.6) 		9.3
(-0.6) 		6.5
(-2) 		6.3
(-2.1) 		16.3
(3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1
(-3)
A 		1.2
(-0.6)
A 		1.5
(3)
A 		1.5
(3)
A 		1
B 1.1
(-3)
A 		1.1
(-3)
A 		2.9
(3)
A 		1.5
(-1.7)
A 		2
C 0.7
(-3)
A 		3.7
(3)
A 		3.6
(2.8)
A 		1.1
(-2.2)
A 		3
avr 0.9
(-3) 		2
(0.7) 		2.7
(3) 		1.4
(-1.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.2
(-3)
A 		1.5
(-2.7)
A 		1.6
(-2.6)
A 		1.5
(-2.7)
A 		2.1
(-2.2)
A 		8
(3)
A 		7
B 1.2
(-3)
A 		8.3
(3)
A 		1.7
(-2.6)
A 		2.7
(-1.7)
A 		1.4
(-2.8)
A 		3.3
(-1.2)
A 		7
C 1.3
(-1.8)
A 		1.6
(-1.1)
A 		3.6
(3)
A 		0.7
(-3)
A 		2.8
(1.3)
A 		2.4
(0.5)
A 		3
avr 1.2
(-3) 		3.8
(1.6) 		2.3
(-1.1) 		1.6
(-2.3) 		2.1
(-1.4) 		4.6
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182956_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5376
Sequence Type Exemplar sequence
Representative Public ID F34D6.1 NCBI
Target Description F34D6.1 /REP_DB=WormBase Gene ID /WP=CE09908 /TR=O17183 /GB=AAC71152.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061930(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061930 NCBI Caenorhabditis elegans F34D6.1 (F34D6.1) mRNA, complete cds. 11/11 None
SNAP00000012247 ENSEMBL cdna:SNAP chromosome:CEL140:II:2678589:2681086:-1 11/11 None
GENEFINDER00000012258 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2679551:2681086:-1 11/11 None
F34D6.1 ENSEMBL cdna:known chromosome:CEL140:II:2679163:2681218:-1 gene:F34D6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2678862-2681217(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F34D6.1
Entrez Gene 173612 Entrez gene
SwissProt O17183 EMBL-EBI
WormBase CE28866 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC71152 Hypothetical protein F34D6.1 [Caenorhabditis elegans] ref|NP_494331.1| F34D6.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.3E-7
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.3E-7
Sequence
Target Sequence 
>C. ELEGANS:182956_AT
gataacggggccaaaaccgagctcaccatctacaaacagttccttgcagcatccaaaaca
gcgagaaagatctttattgaggcaaagtctgagccagcatttctgtatgatcctgatgaa
aaacttcttgtaactaatcatgtcaatgtcaatatcacacccgcaacctgggtgaccaca
gagaacatcaagattttcggcaactgctgtagtttgatcttatacgagacacaatttaac
agtgaagatctcaatatgatcctcaaggattggatggaagcgccggcgtctcccctggta
gttttaagcctcgaagcagctgaatcaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATAACGGGGCCAAAACCGAGCTCA 339 421 640 Antisense
AGCTCACCATCTACAAACAGTTCCT 635 79 659 Antisense
AACAGTTCCTTGCAGCATCCAAAAC 483 137 674 Antisense
GAGGCAAAGTCTGAGCCAGCATTTC 434 405 718 Antisense
GAGCCAGCATTTCTGTATGATCCTG 408 385 730 Antisense
GTCAATGTCAATATCACACCCGCAA 645 463 781 Antisense
CCGCAACCTGGGTGACCACAGAGAA 128 263 800 Antisense
GATTTTCGGCAACTGCTGTAGTTTG 418 429 831 Antisense
AAGGATTGGATGGAAGCGCCGGCGT 216 159 904 Antisense
TCTCCCCTGGTAGTTTTAAGCCTCG 68 611 928 Antisense
AAGCCTCGAAGCAGCTGAATCAATC 525 149 945 Antisense
Sequence Source Affymetrix Proprietary Database