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[182955_at]

Description C29G2.1 /REP_DB=WormBase Gene ID /WP=CE08462 /TR=O16889 /GB=AAB69890.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 29.3
(0.3)
P 		1
(-3)
A 		17.1
(-1.1)
A 		53.2
(3)
A 		52
B 7.5
(-2.5)
A 		17.4
(3)
A 		6.6
(-3)
A 		14.3
(1.3)
A 		11
C 7.2
(-1.7)
A 		5.1
(-2.1)
A 		1.2
(-3)
A 		28.2
(3)
A 		27
avr 14.7
(-1.3) 		7.8
(-3) 		8.3
(-2.9) 		31.9
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 28.3
(3)
A 		1.6
(-3)
A 		1.4
(-3)
A 		4.5
(-2.3)
A 		11.5
(-0.7)
A 		10.5
(-1)
A 		27
B 8.6
(-1.6)
A 		22.1
(1)
A 		32.7
(3)
A 		21.2
(0.8)
A 		1.3
(-3)
A 		23.7
(1.3)
A 		31
C 5.7
(-1.9)
A 		26.3
(3)
A 		1.2
(-3)
A 		4.4
(-2.2)
A 		8.9
(-1.2)
A 		23.8
(2.4)
A 		25
avr 14.2
(0.5) 		16.7
(1.7) 		11.8
(-0.7) 		10
(-1.6) 		7.2
(-3) 		19.3
(3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 10.7
(3)
P 		0.2
(-3)
A 		4.5
(-0.5)
A 		7.8
(1.3)
A 		11
B 2.4
(-1.1)
A 		4.3
(3)
A 		1.5
(-3)
A 		3
(0.2)
A 		3
C 2.4
(-0.3)
A 		1.5
(-1.5)
A 		0.4
(-3)
A 		4.8
(3)
A 		4
avr 5.2
(3) 		2
(-3) 		2.1
(-2.8) 		5.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 5.2
(3)
A 		0.6
(-2.6)
A 		0.3
(-3)
A 		1.1
(-2)
A 		3.5
(0.9)
A 		2.6
(-0.2)
A 		5
B 3
(-1.2)
A 		7.4
(2)
A 		7.9
(2.3)
A 		5.6
(0.7)
A 		0.5
(-3)
A 		8.8
(3)
A 		8
C 2.1
(-1.6)
A 		8
(3)
A 		0.3
(-3)
A 		0.9
(-2.5)
A 		2.9
(-1)
A 		8
(3)
A 		8
avr 3.4
(-1.4) 		5.3
(1.3) 		2.8
(-2.3) 		2.5
(-2.7) 		2.3
(-3) 		6.5
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182955_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15862
Sequence Type Exemplar sequence
Representative Public ID C29G2.1 NCBI
Target Description C29G2.1 /REP_DB=WormBase Gene ID /WP=CE08462 /TR=O16889 /GB=AAB69890.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071309(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071309 NCBI Caenorhabditis elegans C29G2.1 (C29G2.1) mRNA, complete cds. 11/11 None
SNAP00000002208 ENSEMBL cdna:SNAP chromosome:CEL140:V:2590220:2591585:1 11/11 None
GENEFINDER00000002212 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2590220:2591585:1 9/11 None
C29G2.1 ENSEMBL cdna:known chromosome:CEL140:V:2591003:2591585:1 gene:C29G2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2591002-2591585(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C29G2.1
Entrez Gene 183030 Entrez gene
SwissProt O16889 EMBL-EBI
WormBase CE08462 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69890 Hypothetical protein C29G2.1 [Caenorhabditis elegans] ref|NP_503710.1| C29G2.1 [Caenorhabditis elegans] 9.0E-79
blast AAB69890 Hypothetical protein C29G2.1 [Caenorhabditis elegans] ref|NP_503710.1| C29G2.1 [Caenorhabditis elegans] 5.0E-78
blast AAB69890 Hypothetical protein C29G2.1 [Caenorhabditis elegans] ref|NP_503710.1| C29G2.1 [Caenorhabditis elegans] 2.0E-67
blast AAB69891 Hypothetical protein C29G2.2 [Caenorhabditis elegans] ref|NP_503709.1| C29G2.2 [Caenorhabditis elegans] 3.0E-22
blast AAB69891 Hypothetical protein C29G2.2 [Caenorhabditis elegans] ref|NP_503709.1| C29G2.2 [Caenorhabditis elegans] 2.0E-21
blast AAB94147 Hypothetical protein R02D3.7 [Caenorhabditis elegans] ref|NP_499886.1| R02D3.7 [Caenorhabditis elegans] 7.0E-16
blast AAB94147 Hypothetical protein R02D3.7 [Caenorhabditis elegans] ref|NP_499886.1| R02D3.7 [Caenorhabditis elegans] 4.0E-15
blast CAE74727 Hypothetical protein CBG22545 [Caenorhabditis briggsae] 4.0E-13
Sequence
Target Sequence 
>C. ELEGANS:182955_AT
ggaacgtcttcatttacattcccaggattttatcgagcgaaaaatatgagatccccggaa
tgtttggatttactcgattcgatgaaccacttcatattgcattgtcactgggagcatgca
gatctaaaccgaacttccttgactgaaaggaagcgtttgggatccaagtacgaatacgag
aattggttcgaggagaagagggaaaattccggaactaaattcatcaagcgctcctcatcc
agcaaagaaattcactacaactgtgcgctggtcacaaatggagataaccgtcagttcaag
aaatcaaagaagctcgaccaatattgtgcatcgggaaaggtacaattccacgacagtgga
tcagtggacgtgctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACGTCTTCATTTACATTCCCAG 457 529 16 Antisense
ACATTCCCAGGATTTTATCGAGCGA 48 105 31 Antisense
ATGTTTGGATTTACTCGATTCGATG 548 47 75 Antisense
GAACCACTTCATATTGCATTGTCAC 591 345 99 Antisense
ATTGTCACTGGGAGCATGCAGATCT 277 5 116 Antisense
GCAGATCTAAACCGAACTTCCTTGA 605 311 133 Antisense
GAACTAAATTCATCAAGCGCTCCTC 553 349 227 Antisense
TTCACTACAACTGTGCGCTGGTCAC 145 685 266 Antisense
GAAGCTCGACCAATATTGTGCATCG 415 343 324 Antisense
GAAAGGTACAATTCCACGACAGTGG 333 361 350 Antisense
GACAGTGGATCAGTGGACGTGCTCG 472 367 367 Antisense
Sequence Source Affymetrix Proprietary Database