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[182954_s_at]

Description T07A9.9 /REP_DB=WormBase Gene ID /WP=CE17218 /TR=O44411 /GB=AAK39281.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 48      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 37      6grp_total > 37      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15251
1 2 3 4 range
A 5918.6
(-1.7)
P 		3185.8
(-3)
P 		3083.7
(-3)
P 		16266
(3)
P 		13182
B 6072
(-1.7)
P 		2885.3
(-3)
P 		3031.4
(-2.9)
P 		17861.7
(3)
P 		14976
C 5997.2
(-1.8)
P 		3012.3
(-3)
P 		3164.4
(-2.9)
P 		18135.9
(3)
P 		15124
avr 5995.9
(-1.8) 		3027.8
(-3) 		3093.2
(-3) 		17421.2
(3) 		14393

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1946
1 2 3 4 5 6 range
A 4362.8
(0.8)
P 		4595.7
(1.9)
P 		3548.2
(-3)
P 		4596.6
(1.9)
P 		3728
(-2.2)
P 		4838.6
(3)
P 		1290
B 5235.1
(3)
P 		4583.1
(0.2)
P 		3813.7
(-3)
P 		4236.1
(-1.2)
P 		4156
(-1.6)
P 		5002
(2)
P 		1421
C 5493.9
(3)
P 		4672.9
(-0.2)
P 		4033.9
(-2.6)
P 		3940.5
(-3)
P 		4245.6
(-1.8)
P 		5103.1
(1.5)
P 		1553
avr 5030.6
(3) 		4617.2
(1) 		3798.6
(-3) 		4257.7
(-0.8) 		4043.2
(-1.8) 		4981.2
(2.8) 		1232
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3115
1 2 3 4 range
A 2155
(2.2)
P 		691.6
(-3)
P 		806.1
(-2.6)
P 		2381
(3)
P 		1689
B 1936.3
(-0.6)
P 		712.6
(-3)
P 		702.5
(-3)
P 		3806.3
(3)
P 		3104
C 1985.3
(0.1)
P 		866
(-3)
P 		1102.9
(-2.4)
P 		3058
(3)
P 		2192
avr 2025.5
(0.3) 		756.7
(-3) 		870.5
(-2.7) 		3081.8
(3) 		2325

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1264
1 2 3 4 5 6 range
A 804.3
(-2.8)
P 		1634.4
(3)
P 		772.7
(-3)
P 		1165.8
(-0.3)
P 		1124.9
(-0.5)
P 		1178.1
(-0.2)
P 		862
B 1821.6
(2.7)
P 		1525.5
(0.8)
P 		926.1
(-3)
P 		1122
(-1.7)
P 		1688.5
(1.9)
P 		1865.2
(3)
P 		939
C 2036.3
(3)
P 		1425.8
(0.1)
P 		1026.7
(-1.9)
P 		792.4
(-3)
P 		1373.8
(-0.2)
P 		1708.3
(1.4)
P 		1244
avr 1554.1
(2.7) 		1528.6
(2.5) 		908.5
(-3) 		1026.7
(-1.9) 		1395.7
(1.3) 		1583.9
(3) 		675
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182954_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10822
Sequence Type Exemplar sequence
Representative Public ID T07A9.9 NCBI
Target Description T07A9.9 /REP_DB=WormBase Gene ID /WP=CE17218 /TR=O44411 /GB=AAK39281.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171242(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171242 NCBI Caenorhabditis elegans T07A9.9a (T07A9.9) mRNA, complete cds. 11/11 None
SNAP00000017761 ENSEMBL cdna:SNAP chromosome:CEL140:IV:394055:396248:1 11/11 None
GENEFINDER00000017775 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:390606:396248:1 11/11 None
T07A9.9a.1 ENSEMBL cdna:known chromosome:CEL140:IV:394055:396441:1 gene:T07A9.9 11/11 None
T07A9.9a.2 ENSEMBL cdna:known chromosome:CEL140:IV:394055:396554:1 gene:T07A9.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171895 7/11 Cross Hyb Matching Probes None
T07A9.9b.3 7/11 Cross Hyb Matching Probes None
T07A9.9b.2 7/11 Cross Hyb Matching Probes None
T07A9.9b.1 7/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176863 3 1 NM_171242 182954_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:394054-396248(+) 100.0 100.0
Public Domain and Genome References
Ensembl T07A9.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39281 Hypothetical protein T07A9.9a [Caenorhabditis elegans] ref|NP_741288.1| T07A9.9a [Caenorhabditis elegans] sp|O44411|NOG1_CAEEL Probable nucleolar GTP-binding protein 0.0
blast CAE67897 Hypothetical protein CBG13493 [Caenorhabditis briggsae] 0.0
blast AAM97948 Hypothetical protein T07A9.9b [Caenorhabditis elegans] ref|NP_741289.1| T07A9.9b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 6.19999980926514
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 2.70000004768372
Pfam IPR010674 EMBL-EBI Nucleolar GTP-binding 1 6.0E-35
Pfam IPR010674 EMBL-EBI Nucleolar GTP-binding 1 6.0E-35
Pfam IPR001619 EMBL-EBI Sec1-like protein 2.7E-31
Pfam IPR001619 EMBL-EBI Sec1-like protein 1.5E-40
Sequence
Target Sequence 
>C. ELEGANS:182954_S_AT
ggacacaatcttgctgactttgttgacccggaaatccagtcaaagcttgagaatctgctt
cgcgaagaggagctcttggagcaagccggagagtatgaatcagatttggatagtgatgat
gaggagaccaaggagaagttgaagcttgcattgcaaatccgagaaaaagaaaaactgttg
actttggatcatgccgttaacaagagaattgccggaagaattggttcacgtattcatggt
tcaagaaagagagatcgatcaatgtctagattagagaatgagctcggagagttaggtgta
gatgttgacacgaagaaaatgaagaacttgcaaggacaatgtgccaaaccacaacttgga
aagaagatgaaagtgggtcgctcgcgcagtctcagcgccgtccgtccggctccacgtgat
gagttggcattcccagacgaggaaaaacgtgcacatgtcgacaagttgcgtacgaaagca
atgcgtggattgcgccgagaagccaagaagggagaagccgatcgtcacgtatacgacctc
aagccaaagcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACACAATCTTGCTGACTTTGTTG 224 527 1462 Antisense
GACTTTGTTGACCCGGAAATCCAGT 618 367 1477 Antisense
GAATCTGCTTCGCGAAGAGGAGCTC 309 327 1512 Antisense
GTTGACTTTGGATCATGCCGTTAAC 453 433 1638 Antisense
TGGTTCACGTATTCATGGTTCAAGA 339 551 1683 Antisense
TCCGGCTCCACGTGATGAGTTGGCA 134 595 1866 Antisense
ATGAGTTGGCATTCCCAGACGAGGA 416 45 1880 Antisense
GTGCACATGTCGACAAGTTGCGTAC 415 481 1910 Antisense
GGATTGCGCCGAGAAGCCAAGAAGG 321 509 1948 Antisense
GAAGCCGATCGTCACGTATACGACC 91 345 1975 Antisense
GTATACGACCTCAAGCCAAAGCATT 628 449 1990 Antisense
Sequence Source Affymetrix Proprietary Database