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[182951_at]

Description C33G8.3 /REP_DB=WormBase Gene ID /WP=CE06912 /TR=Q18400 /GB=AAC25849.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 61      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 25.1
(3)
A 		25
(3)
A 		5.2
(-3)
A 		18.7
(1.1)
A 		20
B 7.6
(-2)
A 		27.9
(3)
A 		3.9
(-2.9)
A 		3.5
(-3)
A 		24
C 36
(1.1)
A 		4.9
(-2.9)
A 		50.2
(3)
A 		4.4
(-3)
A 		46
avr 22.9
(3) 		19.3
(1.5) 		19.8
(1.7) 		8.9
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 28.4
(2.5)
A 		21.5
(1.1)
A 		1.5
(-3)
A 		30.9
(3)
A 		8.3
(-1.6)
A 		5.3
(-2.2)
A 		29
B 23.9
(3)
A 		23.6
(2.9)
A 		20.5
(2)
A 		3.6
(-3)
A 		18.5
(1.4)
A 		3.7
(-3)
A 		20
C 36.1
(3)
A 		2.3
(-3)
A 		5.3
(-2.5)
A 		19.9
(0.1)
A 		25.8
(1.2)
A 		7.2
(-2.1)
A 		34
avr 29.5
(3) 		15.8
(-0.4) 		9.1
(-2.1) 		18.1
(0.2) 		17.5
(0) 		5.4
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 9.1
(3)
A 		5.4
(0.1)
A 		1.4
(-3)
A 		2.7
(-2)
A 		8
B 2.4
(-1.4)
A 		6.9
(3)
A 		0.9
(-2.8)
A 		0.7
(-3)
A 		6
C 11.9
(1)
A 		1.4
(-2.8)
A 		17.5
(3)
A 		0.7
(-3)
A 		17
avr 7.8
(3) 		4.6
(-0) 		6.6
(1.9) 		1.4
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 5.2
(0.9)
A 		7.6
(2.8)
A 		0.3
(-3)
A 		7.8
(3)
A 		2.5
(-1.2)
A 		1.3
(-2.2)
A 		8
B 8.3
(3)
A 		7.9
(2.7)
A 		5
(0.3)
A 		0.9
(-3)
A 		7.5
(2.4)
A 		1.4
(-2.6)
A 		7
C 13.4
(3)
A 		0.7
(-3)
A 		1.4
(-2.7)
A 		4
(-1.4)
A 		8.4
(0.6)
A 		2.4
(-2.2)
A 		13
avr 9
(3) 		5.4
(0) 		2.2
(-2.6) 		4.2
(-0.9) 		6.1
(0.6) 		1.7
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182951_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11724
Sequence Type Exemplar sequence
Representative Public ID C33G8.3 NCBI
Target Description C33G8.3 /REP_DB=WormBase Gene ID /WP=CE06912 /TR=Q18400 /GB=AAC25849.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072373(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072373 NCBI Caenorhabditis elegans C33G8.3 (C33G8.3) mRNA, complete cds. 11/11 None
SNAP00000000535 ENSEMBL cdna:SNAP chromosome:CEL140:V:7010205:7010817:1 11/11 None
GENEFINDER00000000544 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7010205:7010817:1 11/11 None
C33G8.3 ENSEMBL cdna:known chromosome:CEL140:V:7010205:7010817:1 gene:C33G8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7010205-7010818(+) 66.67 100.0
Public Domain and Genome References
Gene Title
Ensembl C33G8.3
Entrez Gene 183175 Entrez gene
SwissProt Q18400 EMBL-EBI
WormBase CE06912 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC25849 Hypothetical protein C33G8.3 [Caenorhabditis elegans] ref|NP_504774.1| C33G8.3 [Caenorhabditis elegans] 1.0E-15
Sequence
Target Sequence 
>C. ELEGANS:182951_AT
tattcttcttcttgtcatagtcggcgttgtctactgttatccattgaacgaggacaatgt
cgatttggaatcggatgttgccgagatggagggagctgagttggacagagtgaagagagc
aagtgatcataaacttgagaagaagttggatgaaatcatggaaaaggtcgagaagatcaa
ggacaagattgaagagaataaggaaaaacgtgagaagaagaataagaagaagggaaacaa
gaaggacgaggacgaggaggaggaagaggataaggataagaagaagaaggacaagaagaa
gaataaggatagtgaagaggaagaggacaagaaaaaggataaaaagaagaagaatgatag
cagcgatgaatccgaagagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTCTTCTTCTTGTCATAGTCGGC 653 663 27 Antisense
TTCTTGTCATAGTCGGCGTTGTCTA 577 687 35 Antisense
ATAGTCGGCGTTGTCTACTGTTATC 549 15 43 Antisense
GCGTTGTCTACTGTTATCCATTGAA 413 291 50 Antisense
GTCTACTGTTATCCATTGAACGAGG 83 445 55 Antisense
ATTGAACGAGGACAATGTCGATTTG 6 3 69 Antisense
GTCGATTTGGAATCGGATGTTGCCG 436 473 85 Antisense
GATGTTGCCGAGATGGAGGGAGCTG 160 411 100 Antisense
GAGGGAGCTGAGTTGGACAGAGTGA 39 401 115 Antisense
GACAGAGTGAAGAGAGCAAGTGATC 461 367 130 Antisense
GATAGCAGCGATGAATCCGAAGAGG 382 423 382 Antisense
Sequence Source Affymetrix Proprietary Database