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[182950_at]

Description T23B3.2 /REP_DB=WormBase Gene ID /WP=CE14010 /TR=P91491 /GB=AAB42333.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 18      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 02      6grp_total > 18      4grp_total > 29      6grp_highest_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1420
1 2 3 4 range
A 1799.8
(3)
P 		1098.8
(-0.7)
P 		667.6
(-3)
P 		1720.1
(2.6)
P 		1132
B 2087.7
(3)
P 		1541.9
(0.2)
P 		913.3
(-3)
P 		1720
(1.1)
P 		1174
C 1858.7
(3)
P 		1318
(-0.3)
P 		860.5
(-3)
P 		1593.3
(1.4)
P 		998
avr 1915.4
(3) 		1319.6
(-0.2) 		813.8
(-3) 		1677.8
(1.7) 		1102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2835
1 2 3 4 5 6 range
A 4047.1
(3)
P 		2300.3
(-1.6)
P 		1777.3
(-3)
P 		1959.5
(-2.5)
P 		2354.6
(-1.5)
P 		1933.4
(-2.6)
P 		2270
B 2891.3
(3)
P 		2205.3
(-0.9)
P 		1967.4
(-2.3)
P 		1927.7
(-2.5)
P 		2246.5
(-0.7)
P 		1848.4
(-3)
P 		1043
C 2962.4
(3)
P 		2354.3
(0.9)
P 		1212.1
(-3)
P 		2116
(0.1)
P 		1741.8
(-1.2)
P 		2294
(0.7)
P 		1750
avr 3300.3
(3) 		2286.6
(-0.7) 		1652.3
(-3) 		2001.1
(-1.7) 		2114.3
(-1.3) 		2025.3
(-1.6) 		1648
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 491
1 2 3 4 range
A 655.3
(3)
P 		238.5
(-2.2)
P 		174.5
(-3)
P 		251.8
(-2)
P 		481
B 665.7
(3)
P 		380.8
(-0.8)
P 		211.6
(-3)
P 		366.5
(-1)
P 		454
C 615.3
(3)
P 		378.9
(-1.1)
P 		299.9
(-2.5)
P 		268.7
(-3)
P 		347
avr 645.4
(3) 		332.7
(-1.5) 		228.7
(-3) 		295.7
(-2) 		417

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 790
1 2 3 4 5 6 range
A 746
(2)
P 		818.1
(3)
P 		387.1
(-3)
P 		497
(-1.5)
P 		710.5
(1.5)
P 		470.7
(-1.8)
P 		431
B 1006
(3)
P 		734.1
(-0.1)
P 		477.7
(-3)
P 		510.6
(-2.6)
P 		912.7
(1.9)
P 		689.3
(-0.6)
P 		528
C 1098
(3)
P 		718.4
(0.1)
P 		308.5
(-3)
P 		425.5
(-2.1)
P 		563.6
(-1.1)
P 		767.9
(0.5)
P 		790
avr 950
(3) 		756.9
(0.9) 		391.1
(-3) 		477.7
(-2.1) 		728.9
(0.6) 		642.6
(-0.3) 		559
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182950_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.753
Sequence Type Exemplar sequence
Representative Public ID T23B3.2 NCBI
Target Description T23B3.2 /REP_DB=WormBase Gene ID /WP=CE14010 /TR=P91491 /GB=AAB42333.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059521(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059521 NCBI Caenorhabditis elegans T23B3.2 (T23B3.2) mRNA, complete cds. 11/11 None
SNAP00000020985 ENSEMBL cdna:SNAP chromosome:CEL140:I:6724130:6724928:1 11/11 None
GENEFINDER00000020993 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6724130:6724928:1 11/11 None
T23B3.2 ENSEMBL cdna:known chromosome:CEL140:I:6724084:6725125:1 gene:T23B3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6724058-6724857(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23B3.2
Entrez Gene 188772 Entrez gene
SwissProt P91491 EMBL-EBI
WormBase CE14010 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB42333 Hypothetical protein T23B3.2 [Caenorhabditis elegans] ref|NP_491922.1| T23B3.2 [Caenorhabditis elegans] 8.0E-34
blast CAE67261 Hypothetical protein CBG12708 [Caenorhabditis briggsae] 3.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR000612 EMBL-EBI Protein of unknown function UPF0057 2.0E-25
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491922.1 2 33-50,60-82
T23B3.2 2 33-50,60-82
SNAP00000020985 2 33-50,60-82
GENEFINDER00000020993 2 33-50,60-82
Sequence
Target Sequence 
>C. ELEGANS:182950_AT
aaagatgacagccaatgttccagctgatgctgaagaaggaagagtttttgttgttgagtc
gaatcgtcgagatgaaatgatcaagcttgttcttctcatcatcctcatcgtcattttccc
accagcagcagtagccgtccacgctaacgaatgcaacatgcacgtcttcatctctctgat
tctcgtgtttttcttcatgattccatcctacatccacgccatctggtattgctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGATGACAGCCAATGTTCCAGCT 184 123 24 Antisense
GAAGGAAGAGTTTTTGTTGTTGAGT 700 331 58 Antisense
TTTTGTTGTTGAGTCGAATCGTCGA 680 671 69 Antisense
GAATCGTCGAGATGAAATGATCAAG 355 329 84 Antisense
ATGATCAAGCTTGTTCTTCTCATCA 273 47 100 Antisense
TAGCCGTCCACGCTAACGAATGCAA 326 647 155 Antisense
GTCCACGCTAACGAATGCAACATGC 38 477 160 Antisense
AATGCAACATGCACGTCTTCATCTC 659 165 173 Antisense
CTCTGATTCTCGTGTTTTTCTTCAT 413 231 197 Antisense
CTACATCCACGCCATCTGGTATTGC 396 227 231 Antisense
ACATCCACGCCATCTGGTATTGCTT 36 107 233 Antisense
Sequence Source Affymetrix Proprietary Database