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[182949_at]

Description ZK1225.2 /REP_DB=WormBase Gene ID /WP=CE19341 /TR=Q9XXL2 /GB=CAA18374.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 34.8
(-3)
A 		56.1
(-0.6)
A 		59.7
(-0.1)
A 		87
(3)
A 		52
B 55.8
(1.9)
A 		4.1
(-3)
A 		36
(0)
A 		67.2
(3)
A 		63
C 20.5
(-3)
A 		67.9
(3)
A 		24.2
(-2.5)
A 		60.3
(2)
A 		47
avr 37
(-3) 		42.7
(-2) 		40
(-2.5) 		71.5
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 19.3
(-2)
A 		14.3
(-3)
A 		18
(-2.2)
A 		20.8
(-1.7)
A 		25.7
(-0.6)
A 		43.2
(3)
A 		29
B 38.9
(1.8)
A 		18.4
(-3)
A 		37.4
(1.4)
A 		38.1
(1.6)
A 		24.2
(-1.7)
A 		44.2
(3)
A 		26
C 3.4
(-2.8)
A 		48.8
(3)
A 		19.5
(-0.8)
A 		4.3
(-2.7)
A 		2.2
(-3)
A 		39.5
(1.8)
A 		47
avr 20.5
(-2.3) 		27.2
(-0.6) 		25
(-1.2) 		21.1
(-2.1) 		17.4
(-3) 		42.3
(3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 12.7
(-2.1)
A 		12.2
(-3)
A 		15.6
(3)
A 		12.7
(-2.1)
A 		3
B 17.8
(3)
A 		1
(-3)
A 		8.3
(-0.4)
A 		14.3
(1.8)
A 		17
C 6.8
(-3)
A 		19.5
(3)
A 		8.4
(-2.2)
A 		10.2
(-1.4)
A 		13
avr 12.4
(3) 		10.9
(-2.6) 		10.8
(-3) 		12.4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 3.6
(-3)
A 		5.1
(-1.7)
A 		3.9
(-2.7)
A 		5.3
(-1.5)
A 		7.8
(0.7)
A 		10.5
(3)
A 		7
B 13.5
(1.3)
A 		6.1
(-3)
A 		9.1
(-1.3)
A 		10.1
(-0.7)
A 		9.8
(-0.9)
A 		16.5
(3)
A 		10
C 1.3
(-2.7)
A 		14.9
(3)
A 		5
(-1.2)
A 		0.9
(-2.9)
A 		0.7
(-3)
A 		13.2
(2.3)
A 		14
avr 6.1
(-2.5) 		8.7
(-0.5) 		6
(-2.6) 		5.4
(-3) 		6.1
(-2.5) 		13.4
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182949_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.639
Sequence Type Exemplar sequence
Representative Public ID ZK1225.2 NCBI
Target Description ZK1225.2 /REP_DB=WormBase Gene ID /WP=CE19341 /TR=Q9XXL2 /GB=CAA18374.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060913(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060913 NCBI Caenorhabditis elegans ZK1225.2 (ZK1225.2) mRNA, complete cds. 11/11 None
GENEFINDER00000029396 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13216560:13218581:1 11/11 None
SNAP00000029387 ENSEMBL cdna:SNAP chromosome:CEL140:I:13216772:13218581:1 11/11 None
ZK1225.2 ENSEMBL cdna:known chromosome:CEL140:I:13216560:13218581:1 gene:ZK1225.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13216490-13218512(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1225.2
Entrez Gene 191534 Entrez gene
SwissProt Q9XXL2 EMBL-EBI
WormBase CE19341 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8375 acetylglucosaminyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA18374 Hypothetical protein ZK1225.2 [Caenorhabditis elegans] ref|NP_493314.1| ZK1225.2 [Caenorhabditis elegans] 0.0
blast CAE73813 Hypothetical protein CBG21363 [Caenorhabditis briggsae] 1.0E-160
blast CAB04185 Hypothetical protein F26D2.3a [Caenorhabditis elegans] ref|NP_001023854.1| F26D2.3a [Caenorhabditis elegans] 1.0E-154
Protein Domains
Database ID Description E-Value
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 2.2E-74
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 2.2E-74
Sequence
Target Sequence 
>C. ELEGANS:182949_AT
atttcaaccgggtacgtgcaggcctcactgtctcgagcggctgcccaatggttgattaat
gacgtcgatgtgacaactttcatgaatcaactaaatcaatctgccaaagcttgtgacgag
caatttatttccacttttcaaataaacgaagcattaaaaatgccaggacatttcaccagt
cagtgcatccgtcgcggaataagtttacctagttttaccagattttcccgctgggtcctt
ccggatcagaacactagagaaaattgttcaacacaagccgtaagacataatctgtgtttg
tttggtatcgaagacttccgaacgctctccgaaatgccagttttgttatttaataaggtt
attccaggctttgactactctatcgttgattgcactgccgagttaatgtacaatcgaacg
tttttgggacaggttgatcacgagttgcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCAACCGGGTACGTGCAGGCCT 329 13 892 Antisense
TCGAGCGGCTGCCCAATGGTTGATT 469 601 924 Antisense
GCCAGGACATTTCACCAGTCAGTGC 685 279 1053 Antisense
AGTCAGTGCATCCGTCGCGGAATAA 393 59 1069 Antisense
CTAGTTTTACCAGATTTTCCCGCTG 257 1 1100 Antisense
GTCCTTCCGGATCAGAACACTAGAG 141 475 1126 Antisense
GTATCGAAGACTTCCGAACGCTCTC 195 455 1196 Antisense
GCTCTCCGAAATGCCAGTTTTGTTA 161 299 1215 Antisense
TATTCCAGGCTTTGACTACTCTATC 53 665 1251 Antisense
TACTCTATCGTTGATTGCACTGCCG 361 645 1267 Antisense
GGGACAGGTTGATCACGAGTTGCGT 26 495 1317 Antisense
Sequence Source Affymetrix Proprietary Database