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[182948_s_at]

Description ZK154.5 /REP_DB=WormBase Gene ID /WP=CE28177 /TR=Q94314 /GB=AAB09095.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 31      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 208.9
(3)
P 		103.1
(-3)
A 		107.8
(-2.7)
P 		193.9
(2.1)
M 		106
B 231
(3)
P 		89.3
(-3)
A 		93.8
(-2.8)
A 		189.4
(1.2)
A 		142
C 198.7
(3)
P 		139.3
(-1.8)
A 		133.1
(-2.3)
A 		124.7
(-3)
A 		74
avr 212.9
(3) 		110.6
(-3) 		111.6
(-2.9) 		169.3
(0.4) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 121.1
(0.5)
A 		145.6
(2)
P 		160.6
(3)
P 		96.9
(-1.1)
A 		97.9
(-1)
A 		67.4
(-3)
A 		93
B 199
(1.3)
P 		233.6
(3)
P 		160.7
(-0.5)
P 		126
(-2.2)
A 		109
(-3)
P 		133.8
(-1.8)
P 		125
C 174.6
(1.9)
P 		189.1
(3)
P 		113.1
(-2.5)
P 		120.5
(-2)
A 		106.6
(-3)
P 		179.4
(2.3)
M 		83
avr 164.9
(1.3) 		189.4
(3) 		144.8
(-0.2) 		114.5
(-2.3) 		104.5
(-3) 		126.9
(-1.4) 		85
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 76.1
(3)
P 		22.4
(-3)
A 		28.2
(-2.4)
P 		28.4
(-2.3)
M 		54
B 73.7
(3)
P 		22.1
(-3)
A 		21.7
(-3)
A 		40.4
(-0.8)
A 		52
C 65.8
(3)
P 		40
(-0.5)
A 		46.4
(0.4)
A 		21
(-3)
A 		45
avr 71.9
(3) 		28.2
(-3) 		32.1
(-2.5) 		29.9
(-2.8) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 22.3
(-2)
A 		51.8
(3)
P 		35
(0.2)
P 		24.6
(-1.6)
A 		29.5
(-0.8)
A 		16.4
(-3)
A 		35
B 69.2
(1.8)
P 		77.7
(3)
P 		39
(-2.2)
P 		33.4
(-3)
A 		44.3
(-1.5)
P 		49.9
(-0.8)
P 		44
C 64.7
(3)
P 		57.7
(2)
P 		28.8
(-2.3)
P 		24.2
(-3)
A 		34.5
(-1.5)
P 		60.1
(2.3)
M 		41
avr 52.1
(1.2) 		62.4
(3) 		34.3
(-1.8) 		27.4
(-3) 		36.1
(-1.5) 		42.1
(-0.5) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182948_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16272
Sequence Type Exemplar sequence
Representative Public ID ZK154.5 NCBI
Target Description ZK154.5 /REP_DB=WormBase Gene ID /WP=CE28177 /TR=Q94314 /GB=AAB09095.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076915(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076915 NCBI Caenorhabditis elegans ZK154.5 (ZK154.5) mRNA, complete cds. 11/11 A 
GENEFINDER00000014401 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7781019:7792769:-1 11/11 None
ZK154.5 ENSEMBL cdna:known chromosome:CEL140:X:7783140:7787864:-1 gene:ZK154.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014394 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7783103-7787863(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK154.5
Entrez Gene 181039 Entrez gene
SwissProt Q94314 EMBL-EBI
WormBase CE28177 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB09095 Hypothetical protein ZK154.5 [Caenorhabditis elegans] ref|NP_509316.1| ZK154.5 [Caenorhabditis elegans] 0.0
blast AAB09094 Hypothetical protein ZK154.4 [Caenorhabditis elegans] ref|NP_509315.1| ZK154.4 [Caenorhabditis elegans] 4.0E-63
blast CAB03471 Hypothetical protein W02D9.4 [Caenorhabditis elegans] ref|NP_493179.1| W02D9.4 [Caenorhabditis elegans] 4.0E-48
blast CAB03471 Hypothetical protein W02D9.4 [Caenorhabditis elegans] ref|NP_493179.1| W02D9.4 [Caenorhabditis elegans] 6.0E-48
blast CAE72920 Hypothetical protein CBG20240 [Caenorhabditis briggsae] 9.0E-40
Sequence
Target Sequence 
>C. ELEGANS:182948_S_AT
gggaagacgacaacgagagttcgagtagtaatgtggttgattaccgttcactggccaaat
acaattcgaaacatttgccatcaagtttgctcgccgcccatggtattcaaattgaatcac
agttggttaaggaggtaaaaatcgaacaagaaatgttgatggaggagaagaaaccggaat
cattgctcttacatcctacacagtcaccctccatttcaatcttcaatttgaatttttcct
cattgaatatattttgcaaaattagcttgttcaaaaatttcttgctctgtattgtcatgt
cat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAAGACGACAACGAGAGTTCGAG 599 493 3137 Antisense
GAGAGTTCGAGTAGTAATGTGGTTG 240 393 3151 Antisense
TGTGGTTGATTACCGTTCACTGGCC 376 555 3168 Antisense
CGTTCACTGGCCAAATACAATTCGA 42 247 3181 Antisense
GAAACATTTGCCATCAAGTTTGCTC 296 357 3204 Antisense
TCGCCGCCCATGGTATTCAAATTGA 597 599 3227 Antisense
GAATCACAGTTGGTTAAGGAGGTAA 432 327 3250 Antisense
GAGAAGAAACCGGAATCATTGCTCT 137 391 3301 Antisense
TCTTCAATTTGAATTTTTCCTCATT 217 617 3356 Antisense
GCTTGTTCAAAAATTTCTTGCTCTG 406 307 3401 Antisense
TTCTTGCTCTGTATTGTCATGTCAT 77 691 3415 Antisense
Sequence Source Affymetrix Proprietary Database