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[182947_at]

Description ZK154.5 /REP_DB=WormBase Gene ID /WP=CE28177 /TR=Q94314 /GB=AAB09095.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 53      4grp_high_8_8 > 16      6grp_highest_nonorm > 90      6grp_total > 24      4grp_total > 31      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 189.4
(3)
P 		128.3
(-3)
P 		129.8
(-2.9)
P 		167.7
(0.9)
P 		61
B 170.4
(2.7)
P 		135.1
(-2.1)
P 		128.8
(-3)
P 		172.9
(3)
P 		44
C 196.1
(3)
P 		150.1
(-3)
P 		157.6
(-2)
P 		150.2
(-3)
P 		46
avr 185.3
(3) 		137.8
(-3) 		138.7
(-2.9) 		163.6
(0.3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 180.9
(0.9)
P 		219.1
(3)
P 		167.2
(0.2)
P 		170.7
(0.4)
P 		108.9
(-3)
P 		128.9
(-1.9)
P 		110
B 248
(3)
P 		222.8
(1.5)
P 		229.6
(1.9)
P 		154.7
(-2.5)
P 		147.1
(-3)
P 		159.5
(-2.3)
P 		101
C 239.9
(3)
P 		144.7
(-1.6)
P 		158.1
(-1)
P 		148.7
(-1.4)
P 		134.5
(-2.1)
P 		116.7
(-3)
P 		123
avr 222.9
(3) 		195.5
(1.2) 		185
(0.5) 		158
(-1.2) 		130.2
(-3) 		135
(-2.7) 		93
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 68.9
(3)
P 		27.9
(-2.6)
P 		33.9
(-1.7)
P 		24.6
(-3)
P 		44
B 54.3
(3)
P 		33.4
(-2.1)
P 		29.8
(-3)
P 		36.8
(-1.3)
P 		25
C 64.9
(3)
P 		43.2
(-0.3)
P 		54.9
(1.5)
P 		25.3
(-3)
P 		40
avr 62.7
(3) 		34.8
(-2) 		39.5
(-1.1) 		28.9
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 33.4
(-2.7)
P 		77.9
(3)
P 		36.4
(-2.4)
P 		43.3
(-1.5)
P 		32.9
(-2.8)
P 		31.4
(-3)
P 		47
B 86.3
(3)
P 		74.2
(1.4)
P 		55.8
(-1)
P 		41
(-3)
P 		59.7
(-0.5)
P 		59.5
(-0.5)
P 		45
C 88.9
(3)
P 		44.2
(-1.5)
P 		40.2
(-2)
P 		29.9
(-3)
P 		43.5
(-1.6)
P 		39.1
(-2.1)
P 		59
avr 69.5
(3) 		65.4
(2.2) 		44.1
(-1.9) 		38.1
(-3) 		45.4
(-1.6) 		43.3
(-2) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182947_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16272
Sequence Type Exemplar sequence
Representative Public ID ZK154.5 NCBI
Target Description ZK154.5 /REP_DB=WormBase Gene ID /WP=CE28177 /TR=Q94314 /GB=AAB09095.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076915(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076915 NCBI Caenorhabditis elegans ZK154.5 (ZK154.5) mRNA, complete cds. 11/11 None
GENEFINDER00000014401 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7781019:7792769:-1 11/11 None
SNAP00000014394 ENSEMBL cdna:SNAP chromosome:CEL140:X:7783376:7787864:-1 10/11 None
ZK154.5 ENSEMBL cdna:known chromosome:CEL140:X:7783140:7787864:-1 gene:ZK154.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7783103-7787863(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK154.5
Entrez Gene 181039 Entrez gene
SwissProt Q94314 EMBL-EBI
WormBase CE28177 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB09095 Hypothetical protein ZK154.5 [Caenorhabditis elegans] ref|NP_509316.1| ZK154.5 [Caenorhabditis elegans] 0.0
blast AAB09094 Hypothetical protein ZK154.4 [Caenorhabditis elegans] ref|NP_509315.1| ZK154.4 [Caenorhabditis elegans] 4.0E-63
blast CAB03471 Hypothetical protein W02D9.4 [Caenorhabditis elegans] ref|NP_493179.1| W02D9.4 [Caenorhabditis elegans] 4.0E-48
blast CAB03471 Hypothetical protein W02D9.4 [Caenorhabditis elegans] ref|NP_493179.1| W02D9.4 [Caenorhabditis elegans] 6.0E-48
blast CAE72920 Hypothetical protein CBG20240 [Caenorhabditis briggsae] 9.0E-40
Sequence
Target Sequence 
>C. ELEGANS:182947_AT
gcccagcgctcgtgatttgtttgagaagaataagtcggagccttctgaatcaagatataa
agtaaaaacaagggaagagtacatgaaagaaaacgacgaagaggaagaattggctggaga
aactgttagtttcgaatatttcacagaaaatcatgcgtatcaagacccgttgggccggta
tttggaaggctctagaagtccaacaccagattgggaagacgacaacgagagttcgagtag
taatgtggttgattaccgttcactggccaaatacaattcgaaacatttgccatcaagttt
gctcgccgcccatggtattcaaattgaatcacagttggttaaggaggtaaaaatcgaaca
agaaatgttgatggaggagaagaaaccggaatcattgctcttacatcctaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCCAGCGCTCGTGATTTGTTTGAG 492 287 2925 Antisense
GAATAAGTCGGAGCCTTCTGAATCA 569 325 2952 Antisense
GTCGGAGCCTTCTGAATCAAGATAT 577 471 2958 Antisense
GAATTGGCTGGAGAAACTGTTAGTT 482 321 3031 Antisense
AACTGTTAGTTTCGAATATTTCACA 459 143 3045 Antisense
AAATCATGCGTATCAAGACCCGTTG 586 115 3072 Antisense
TCAAGACCCGTTGGGCCGGTATTTG 481 627 3084 Antisense
TGGGCCGGTATTTGGAAGGCTCTAG 648 513 3095 Antisense
AAGGCTCTAGAAGTCCAACACCAGA 525 159 3110 Antisense
GTCCAACACCAGATTGGGAAGACGA 162 471 3122 Antisense
GGAATCATTGCTCTTACATCCTACA 289 533 3312 Antisense
Sequence Source Affymetrix Proprietary Database