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[182946_at]

Description F48C1.2 /REP_DB=WormBase Gene ID /WP=CE10734 /TR=O01573 /GB=AAB52344.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 35.5
(-3)
A 		34.7
(-3)
A 		77.6
(-0.8)
M 		151.3
(3)
P 		117
B 56.4
(-1.8)
A 		61.5
(-1.7)
A 		17.2
(-3)
A 		219.5
(3)
P 		202
C 34.5
(-2.8)
A 		28.1
(-3)
A 		55.1
(-2.1)
A 		212.7
(3)
P 		185
avr 42.1
(-3) 		41.4
(-3) 		50
(-2.7) 		194.5
(3) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 52
(-2.2)
A 		37.6
(-3)
A 		114.8
(1.4)
P 		106
(0.9)
A 		110.7
(1.1)
P 		143.9
(3)
P 		106
B 43
(-3)
A 		60
(-2.5)
A 		76.2
(-2)
A 		80.9
(-1.8)
P 		129.5
(-0.3)
P 		235
(3)
P 		192
C 9.9
(-3)
A 		73.9
(-1.3)
A 		52.1
(-1.9)
A 		108.1
(-0.4)
P 		163.2
(1.1)
P 		233.2
(3)
P 		223
avr 35
(-3) 		57.2
(-2.2) 		81
(-1.4) 		98.3
(-0.8) 		134.5
(0.5) 		204
(3) 		169
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 12.9
(-0.8)
A 		7.5
(-3)
A 		20.3
(2.3)
M 		22.1
(3)
P 		15
B 18
(-1)
A 		15.2
(-1.4)
A 		4
(-3)
A 		46.8
(3)
P 		43
C 11.4
(-2.3)
A 		8.1
(-3)
A 		19.2
(-0.6)
A 		35.9
(3)
P 		28
avr 14.1
(-2.1) 		10.3
(-3) 		14.5
(-2) 		34.9
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 9.6
(-3)
A 		13.4
(-2.1)
A 		25
(0.6)
P 		26.9
(1.1)
A 		33.4
(2.6)
P 		35
(3)
P 		25
B 15
(-3)
A 		20
(-2.6)
A 		18.5
(-2.7)
A 		21.4
(-2.5)
P 		52.6
(0.1)
P 		87.6
(3)
P 		73
C 3.7
(-3)
A 		22.5
(-1.5)
A 		13.3
(-2.2)
A 		21.7
(-1.5)
P 		52.8
(1)
P 		78.1
(3)
P 		74
avr 9.4
(-3) 		18.6
(-2) 		18.9
(-2) 		23.3
(-1.5) 		46.3
(0.9) 		66.9
(3) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182946_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.649
Sequence Type Exemplar sequence
Representative Public ID F48C1.2 NCBI
Target Description F48C1.2 /REP_DB=WormBase Gene ID /WP=CE10734 /TR=O01573 /GB=AAB52344.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059166(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059166 NCBI Caenorhabditis elegans F48C1.2 (F48C1.2) mRNA, complete cds. 9/11 None
GENEFINDER00000025999 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5319734:5321070:1 9/11 None
F48C1.2 ENSEMBL cdna:known chromosome:CEL140:I:5319734:5321070:1 gene:F48C1.2 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025984 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5319733-5321070(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48C1.2
Entrez Gene 185972 Entrez gene
SwissProt O01573 EMBL-EBI
WormBase CE34311 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52344 Hypothetical protein F48C1.2 [Caenorhabditis elegans] ref|NP_491567.2| F48C1.2 [Caenorhabditis elegans] 0.0
blast CAE66942 Hypothetical protein CBG12334 [Caenorhabditis briggsae] 7.0E-91
blast CAE66399 Hypothetical protein CBG11663 [Caenorhabditis briggsae] 1.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.0E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491567.2 1 333-355
F48C1.2 1 333-355
GENEFINDER00000025999 1 333-355
Sequence
Target Sequence 
>C. ELEGANS:182946_AT
agaatcggtttccaacgcatcattgttgcaaattcgcgatgttcagagtaaagatattat
ctggaaaattgcaaataaatggatcgagacagatgctgcaattggaacgagatttcagct
aacttcaatgagcaaggaaattattacccaattctcatctcatttcaagaacagaatcat
ggcaattaaagcaaaattccataaaaatgtgaataatacaacatttatttccagttccgc
gtctgacgtcgagattctcatcaggactgataacccgatgaagcatattcttctcaaatt
ggcaagaacttggagagttgcaagaccatttacttgtattgtaatttccgctgaaaccga
acaatccgaattcgtcaactttggaatgtgggtctctaaaaaagtgataccactttggga
atacatctctttgttcctggctgatgaattcaacgacgacgatggtctgaatttgtcgag
tttccttattctgctcttacactgcatctggctcattttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAATCGGTTTCCAACGCATCATTG 643 73 600 Antisense
GTTGCAAATTCGCGATGTTCAGAGT 513 437 624 Antisense
ACAACATTTATTTCCAGTTCCGCGT 607 111 817 Antisense
AGTTCCGCGTCTGACGTCGAGATTC 694 61 832 Antisense
AGGACTGATAACCCGATGAAGCATA 498 53 862 Antisense
ATTTCCGCTGAAACCGAACAATCCG 648 15 943 Antisense
ATACCACTTTGGGAATACATCTCTT 173 23 1006 Antisense
TACATCTCTTTGTTCCTGGCTGATG 241 645 1021 Antisense
GATGGTCTGAATTTGTCGAGTTTCC 355 407 1060 Antisense
TCGAGTTTCCTTATTCTGCTCTTAC 686 601 1075 Antisense
TTACACTGCATCTGGCTCATTTTCA 319 683 1096 Antisense
Sequence Source Affymetrix Proprietary Database