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[182945_at]

Description C53A5.10 /REP_DB=WormBase Gene ID /WP=CE08959 /TR=O17701 /GB=CAB03990.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 10      6grp_cgc > 99      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 23.9
(-2.4)
A 		18.8
(-2.7)
A 		13.8
(-3)
A 		114.2
(3)
A 		100
B 24.8
(-3)
A 		32.9
(0)
A 		40.9
(3)
A 		40.4
(2.8)
P 		16
C 37.2
(-2.3)
A 		48.7
(-0.7)
A 		31.8
(-3)
A 		76.4
(3)
P 		45
avr 28.6
(-3) 		33.5
(-2.4) 		28.8
(-3) 		77
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 2.5
(-3)
A 		15.4
(-1.5)
A 		10.7
(-2)
A 		7.2
(-2.5)
A 		53.9
(3)
A 		28.9
(0.1)
A 		51
B 42.1
(3)
A 		39.7
(2.6)
A 		40.5
(2.8)
A 		3.5
(-3)
A 		29.6
(1.1)
A 		12.4
(-1.6)
A 		39
C 8.8
(-1.6)
A 		28.7
(3)
A 		2.5
(-3)
A 		4.4
(-2.6)
A 		19.8
(1)
A 		21.1
(1.3)
A 		26
avr 17.8
(-0.4) 		27.9
(1.7) 		17.9
(-0.4) 		5
(-3) 		34.4
(3) 		20.8
(0.2) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 8.7
(-0.7)
A 		4.1
(-2.8)
A 		3.6
(-3)
A 		16.7
(3)
A 		13
B 7.9
(-3)
A 		8.1
(-2.3)
A 		9.5
(3)
A 		8.6
(-0.4)
P 		2
C 12.3
(-0.5)
A 		14
(3)
A 		11.1
(-3)
A 		12.9
(0.7)
P 		3
avr 9.6
(-1) 		8.7
(-2.2) 		8.1
(-3) 		12.7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.5
(-3)
A 		5.5
(-1.1)
A 		2.3
(-2.3)
A 		1.8
(-2.5)
A 		16.3
(3)
A 		7
(-0.5)
A 		16
B 14.6
(3)
A 		13.2
(2.4)
A 		9.8
(0.9)
A 		0.9
(-3)
A 		12
(1.9)
A 		4.6
(-1.4)
A 		14
C 3.3
(-1)
A 		8.8
(3)
A 		0.6
(-3)
A 		0.9
(-2.8)
A 		6.4
(1.2)
A 		7.1
(1.8)
A 		8
avr 6.1
(-0.2) 		9.2
(1.6) 		4.2
(-1.3) 		1.2
(-3) 		11.6
(3) 		6.2
(-0.1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182945_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13808
Sequence Type Exemplar sequence
Representative Public ID C53A5.10 NCBI
Target Description C53A5.10 /REP_DB=WormBase Gene ID /WP=CE08959 /TR=O17701 /GB=CAB03990.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074205(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074205 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-32) (srt-32) mRNA, complete cds. 11/11 None
C53A5.10 ENSEMBL cdna:known chromosome:CEL140:V:14562201:14563882:1 gene:C53A5.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000009297 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14562200-14563882(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srt-32
Ensembl C53A5.10
Entrez Gene 183740 Entrez gene
SwissProt O17701 EMBL-EBI
WormBase CE37816 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03990 Hypothetical protein C53A5.10 [Caenorhabditis elegans] ref|NP_506606.2| Serpentine Receptor, class T family member (srt-32) [Caenorhabditis elegans] 0.0
blast CAI46604 Hypothetical protein F40G12.15 [Caenorhabditis elegans] ref|NP_001023908.1| F40G12.15 [Caenorhabditis elegans] 1.0E-109
blast CAB01181 Hypothetical protein F40G12.8 [Caenorhabditis elegans] ref|NP_506535.2| Serpentine Receptor, class T family member (srt-33) [Caenorhabditis elegans] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506606.2 7 39-61,74-96,111-133,154-176,203-225,246-265,275-297
C53A5.10 7 39-61,74-96,111-133,154-176,203-225,246-265,275-297
Sequence
Target Sequence 
>C. ELEGANS:182945_AT
tcatcccatttggttatgcgtcatatttcttgattttcaatccaccaatcgtgtttacat
caaaatttcattcatggttttttgatcccttgatatttgaaggaagaagtgcagaataca
ataatattccagttttattcaacaattttctaattgtaattacgacgtgttgcctgtata
tgttcttctgttgtgctcttggagctaagacaaaaaacacgaaaacaagttcccaaaccc
gaaaaatgagtctccaaatatttttccaatcagcaatgatatgcgctgtcaatttttctg
catctatgatttacgtaattatgaactatgtggaagtcccattctcaattatactatttg
gtcaattcacttggcaaatgggaagtgcatcgccagtattcatatatttaacacttaata
aaacaatcagaaatggggtactcctgaaattggggctaacggtgagaattatttataaac
tattcgatgcaatctttcaaaattttaagttcgcattcggaaaaacttcagttgtgtcaa
aaacttcagcagctctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATCCCATTTGGTTATGCGTCATA 705 619 488 Antisense
TCAATCCACCAATCGTGTTTACATC 476 633 524 Antisense
ATGGTTTTTTGATCCCTTGATATTT 477 51 561 Antisense
ACGACGTGTTGCCTGTATATGTTCT 390 93 649 Antisense
TGTATATGTTCTTCTGTTGTGCTCT 314 561 662 Antisense
GTCTCCAAATATTTTTCCAATCAGC 249 471 737 Antisense
CGCTGTCAATTTTTCTGCATCTATG 603 255 771 Antisense
GTGGAAGTCCCATTCTCAATTATAC 353 491 817 Antisense
AAGTGCATCGCCAGTATTCATATAT 381 159 870 Antisense
TGGGGTACTCCTGAAATTGGGGCTA 118 551 921 Antisense
TGTGTCAAAAACTTCAGCAGCTCTT 611 555 1020 Antisense
Sequence Source Affymetrix Proprietary Database