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[182944_at]

Description R05A10.2 /REP_DB=WormBase Gene ID /WP=CE16288 /TR=O45698 /GB=CAB05262.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 12      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 31      6grp_total > 22      4grp_total > 45      6grp_highest_sub > 01_02_03      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 957
1 2 3 4 range
A 1407.9
(3)
P 		1104.4
(0.2)
P 		755
(-3)
P 		840.3
(-2.2)
P 		653
B 1570
(3)
P 		1066.1
(-0.9)
P 		846.2
(-2.6)
P 		788.6
(-3)
P 		781
C 1606.4
(3)
P 		1171
(0.3)
P 		832.9
(-1.9)
P 		649.9
(-3)
P 		957
avr 1528.1
(3) 		1113.8
(-0.2) 		811.4
(-2.6) 		759.6
(-3) 		769

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 991
1 2 3 4 5 6 range
A 1182
(1.4)
P 		1329.6
(2.4)
P 		1428.6
(3)
P 		812.7
(-0.9)
P 		491.9
(-3)
P 		495.1
(-3)
P 		937
B 1151.2
(0.9)
P 		1446.7
(2.8)
P 		1482.7
(3)
P 		741.4
(-1.7)
P 		533.3
(-3)
P 		657.8
(-2.2)
P 		949
C 1170.1
(1.7)
P 		1350.2
(3)
P 		777.6
(-1.1)
P 		942.3
(0.1)
P 		514.5
(-3)
P 		660.7
(-2)
P 		836
avr 1167.8
(1.6) 		1375.5
(3) 		1229.6
(2) 		832.1
(-0.8) 		513.2
(-3) 		604.5
(-2.4) 		862
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 422
1 2 3 4 range
A 512.6
(3)
P 		239.7
(-1.2)
P 		197.4
(-1.9)
P 		123
(-3)
P 		390
B 500.7
(3)
P 		263.3
(-1.3)
P 		196.1
(-2.5)
P 		168
(-3)
P 		333
C 531.8
(3)
P 		336.7
(0.2)
P 		290.3
(-0.4)
P 		109.6
(-3)
P 		422
avr 515
(3) 		279.9
(-0.7) 		227.9
(-1.5) 		133.5
(-3) 		382

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 361
1 2 3 4 5 6 range
A 217.9
(-1.3)
P 		472.9
(3)
P 		311.1
(0.2)
P 		206.1
(-1.5)
P 		148.4
(-2.5)
P 		120.5
(-3)
P 		352
B 400.6
(1.3)
P 		481.5
(3)
P 		360.1
(0.4)
P 		196.4
(-3)
P 		216.7
(-2.6)
P 		245.3
(-2)
P 		285
C 433.7
(3)
P 		412
(2.5)
P 		197.9
(-2.3)
P 		189.5
(-2.5)
P 		166.5
(-3)
P 		221.2
(-1.8)
P 		267
avr 350.7
(0.7) 		455.5
(3) 		289.7
(-0.6) 		197.3
(-2.6) 		177.2
(-3) 		195.7
(-2.6) 		278
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182944_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9025
Sequence Type Exemplar sequence
Representative Public ID R05A10.2 NCBI
Target Description R05A10.2 /REP_DB=WormBase Gene ID /WP=CE16288 /TR=O45698 /GB=CAB05262.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070319(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070319 NCBI Caenorhabditis elegans R05A10.2 (R05A10.2) mRNA, complete cds. 11/11 None
SNAP00000012477 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14177250:14178788:1 11/11 None
GENEFINDER00000012479 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14177253:14178788:1 11/11 None
R05A10.2 ENSEMBL cdna:known chromosome:CEL140:IV:14177253:14178788:1 gene:R05A10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14177258-14178794(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R05A10.2
Entrez Gene 187594 Entrez gene
SwissProt O45698 EMBL-EBI
WormBase CE16288 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05262 Hypothetical protein R05A10.2 [Caenorhabditis elegans] ref|NP_502720.1| R05A10.2 [Caenorhabditis elegans] 3.0E-72
blast CAE71760 Hypothetical protein CBG18750 [Caenorhabditis briggsae] 8.0E-41
Sequence
Target Sequence 
>C. ELEGANS:182944_AT
gtcgaaactcgtacattttgtgttctttttgtcaattgctcttcatgtaattgctcgtgc
aactgaatcctcggaatccgatactatggagtcttcgaggtcttcttcgtcggaggaaat
gagatataatgaggatttagaagatttggtgaaagtggatgctggtaactcaacaatcga
agaagtgaaagattcttctgaaaattccaaaaaatctggagaaattgaagtgaaaaaagc
tgacaagccagctgcagagaacgatctggagaaatttgataaaggattgaattctgataa
gaaggagtacgttcagaaaagatcccatgttgattcgatttcaactaactctacggaaaa
tctatccgacgatgaaatggatgtaatggctcatctcaacaagacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGAAACTCGTACATTTTGTGTTC 166 475 15 Antisense
TTTTGTGTTCTTTTTGTCAATTGCT 235 679 30 Antisense
CTCTTCATGTAATTGCTCGTGCAAC 470 229 53 Antisense
CTCGTGCAACTGAATCCTCGGAATC 202 233 68 Antisense
CCTCGGAATCCGATACTATGGAGTC 484 267 83 Antisense
ACTATGGAGTCTTCGAGGTCTTCTT 667 101 97 Antisense
GTGGATGCTGGTAACTCAACAATCG 46 491 169 Antisense
GACAAGCCAGCTGCAGAGAACGATC 490 365 256 Antisense
AAAGATCCCATGTTGATTCGATTTC 668 121 332 Antisense
GATTCGATTTCAACTAACTCTACGG 230 433 346 Antisense
GTAATGGCTCATCTCAACAAGACAA 82 463 397 Antisense
Sequence Source Affymetrix Proprietary Database