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[182943_at]

Description C08D8.1 /REP_DB=WormBase Gene ID /WP=CE03976 /TR=Q17824 /GB=AAK39157.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 391
1 2 3 4 range
A 43.5
(-3)
A 		45.9
(-2.9)
A 		57.3
(-2.7)
A 		291.9
(3)
P 		248
B 33.6
(-3)
A 		44.3
(-2.8)
A 		61.9
(-2.6)
A 		418.6
(3)
P 		385
C 27.2
(-3)
A 		48
(-2.6)
A 		55.7
(-2.5)
P 		340.2
(3)
P 		313
avr 34.8
(-3) 		46.1
(-2.8) 		58.3
(-2.6) 		350.2
(3) 		315

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 42.1
(-2.9)
P 		40.1
(-3)
A 		64
(-1.6)
P 		56.2
(-2.1)
P 		142.8
(3)
P 		136.5
(2.6)
P 		103
B 19.3
(-3)
A 		48.9
(-2.1)
M 		53.7
(-2)
A 		97.4
(-0.7)
P 		225.5
(3)
P 		171.8
(1.4)
P 		206
C 37.5
(-3)
A 		62.1
(-1.9)
A 		50.1
(-2.4)
A 		124.9
(0.9)
P 		171.7
(3)
P 		152.8
(2.2)
P 		134
avr 33
(-3) 		50.4
(-2.3) 		55.9
(-2.1) 		92.8
(-0.6) 		180
(3) 		153.7
(1.9) 		147
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 15.8
(-1.9)
A 		10
(-3)
A 		15
(-2.1)
A 		42.7
(3)
P 		33
B 10.7
(-3)
A 		11
(-3)
A 		14.4
(-2.7)
A 		89.2
(3)
P 		79
C 9
(-3)
A 		13.8
(-2.4)
A 		19.4
(-1.7)
P 		57.4
(3)
P 		48
avr 11.8
(-3) 		11.6
(-3) 		16.3
(-2.5) 		63.1
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 7.8
(-3)
P 		14.2
(-1.9)
A 		13.9
(-2)
P 		14.3
(-1.9)
P 		43.1
(3)
P 		33.2
(1.3)
P 		35
B 6.7
(-3)
A 		16.3
(-2.3)
M 		13
(-2.6)
A 		25.8
(-1.7)
P 		91.6
(3)
P 		64.1
(1.1)
P 		85
C 13.9
(-2.8)
A 		19
(-2.1)
A 		12.7
(-3)
A 		25.1
(-1.3)
P 		55.6
(3)
P 		51.2
(2.4)
P 		43
avr 9.5
(-3) 		16.5
(-2.2) 		13.2
(-2.6) 		21.7
(-1.6) 		63.4
(3) 		49.5
(1.5) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182943_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12323
Sequence Type Exemplar sequence
Representative Public ID C08D8.1 NCBI
Target Description C08D8.1 /REP_DB=WormBase Gene ID /WP=CE03976 /TR=Q17824 /GB=AAK39157.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072751(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072751 NCBI Caenorhabditis elegans C08D8.1 (C08D8.1) mRNA, complete cds. 11/11 None
GENEFINDER00000018223 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8346608:8352470:1 11/11 None
C08D8.1 ENSEMBL cdna:known chromosome:CEL140:V:8350734:8352499:1 gene:C08D8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8350734-8352500(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08D8.1
Entrez Gene 182394 Entrez gene
SwissProt Q17824 EMBL-EBI
WormBase CE03976 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39157 Hypothetical protein C08D8.1 [Caenorhabditis elegans] ref|NP_505152.1| C08D8.1 [Caenorhabditis elegans] 0.0
blast CAE66070 Hypothetical protein CBG11284 [Caenorhabditis briggsae] 0.0
blast AAK39157 Hypothetical protein C08D8.1 [Caenorhabditis elegans] ref|NP_505152.1| C08D8.1 [Caenorhabditis elegans] 1.0E-170
blast CAE56043 Hypothetical protein CBG23609 [Caenorhabditis briggsae] 1.0E-155
blast CAE66070 Hypothetical protein CBG11284 [Caenorhabditis briggsae] 1.0E-145
blast CAE56043 Hypothetical protein CBG23609 [Caenorhabditis briggsae] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR010291 EMBL-EBI Eukaryotic protein of unknown function DUF895 2.6E-19
Pfam IPR010291 EMBL-EBI Eukaryotic protein of unknown function DUF895 6.4E-43
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505152.1 7 13-30,51-73,83-105,135-157,172-194,207-226,269-291
C08D8.1 7 13-30,51-73,83-105,135-157,172-194,207-226,269-291
GENEFINDER00000018223 12 6-25,104-126,141-162,169-188,192-209,230-252,262-284,314-336,351-373,385-404,414-436,483-505
Sequence
Target Sequence 
>C. ELEGANS:182943_AT
gaaacttgatgctactattcttcatgtttttgtacactggattggaattatctttctttt
ctgcagtatttcctacaatggtctcattcacaaaatctctgggaaatactagagatttaa
atgctatttcatctatttttgtcggaatcggaaatgtttctggctgctttgcattgtctg
ttcttggctctcgtgttcgagaatttgggagaaagaaaatggtttttccgtatattatct
tagtgtgcggttttcttttgggagttggtgacacaatattcaatcaacagtgttacacta
ttttgagtgatatttacgatcatgacaagcgaatcgaagcttttgcagtttatagattct
atcagagcgctgccagttgtgttgccatgttctattcagctcatgctcttttgagaacgc
atgttattattctttcaatgttttgcgtaatagctacagctacgttttttggagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTTGATGCTACTATTCTTCAT 201 357 410 Antisense
ATCTTTCTTTTCTGCAGTATTTCCT 624 31 459 Antisense
AGTATTTCCTACAATGGTCTCATTC 31 63 474 Antisense
TCGGAAATGTTTCTGGCTGCTTTGC 283 607 557 Antisense
CTGCTTTGCATTGTCTGTTCTTGGC 427 237 573 Antisense
TGTTCTTGGCTCTCGTGTTCGAGAA 708 561 588 Antisense
TAGTGTGCGGTTTTCTTTTGGGAGT 190 653 650 Antisense
AGATTCTATCAGAGCGCTGCCAGTT 407 65 763 Antisense
TGCCAGTTGTGTTGCCATGTTCTAT 345 587 780 Antisense
GTTCTATTCAGCTCATGCTCTTTTG 530 443 798 Antisense
TAGCTACAGCTACGTTTTTTGGAGT 693 649 860 Antisense
Sequence Source Affymetrix Proprietary Database