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[182942_at]

Description ZK1058.9 /REP_DB=WormBase Gene ID /WP=CE01107 /TR=Q23385 /GB=CAA84682.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 81      6grp_highest_nonorm > 45      6grp_total > 92      4grp_total > 59      6grp_highest_sub > 05      6grp_high1_sub > 04      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1423
1 2 3 4 range
A 1087.7
(1.8)
P 		1314.8
(3)
P 		1292.6
(2.9)
P 		154.9
(-3)
A 		1160
B 1092.1
(1)
P 		1569.9
(3)
P 		1344.3
(2)
P 		147.3
(-3)
A 		1423
C 1185.5
(1.6)
P 		1510.1
(3)
P 		1308.2
(2.1)
P 		164.9
(-3)
A 		1345
avr 1121.8
(1.4) 		1464.9
(3) 		1315
(2.3) 		155.7
(-3) 		1309

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1517
1 2 3 4 5 6 range
A 2317.5
(-0.3)
P 		1990.1
(-1.6)
P 		2299.2
(-0.3)
P 		2624.7
(1)
P 		3141.9
(3)
P 		1625
(-3)
P 		1517
B 2066.3
(-1.5)
P 		2092
(-1.3)
P 		2195.6
(-0.9)
P 		2830
(1.7)
P 		3136.6
(3)
P 		1693.5
(-3)
P 		1443
C 1999.2
(-1.9)
P 		2084.3
(-1.5)
P 		2398.3
(0.1)
P 		2690.9
(1.7)
P 		2947.1
(3)
P 		1796.1
(-3)
P 		1151
avr 2127.7
(-1.1) 		2055.5
(-1.5) 		2297.7
(-0.4) 		2715.2
(1.4) 		3075.2
(3) 		1704.9
(-3) 		1370
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 433
1 2 3 4 range
A 396
(3)
P 		285.4
(1.2)
P 		337.9
(2.1)
P 		22.7
(-3)
A 		373
B 348.3
(2.3)
P 		387.7
(3)
P 		311.5
(1.7)
P 		31.4
(-3)
A 		356
C 392.4
(2.1)
P 		434.2
(2.7)
P 		455.9
(3)
P 		27.8
(-3)
A 		428
avr 378.9
(3) 		369.1
(2.8) 		368.4
(2.8) 		27.3
(-3) 		352

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 879
1 2 3 4 5 6 range
A 427.2
(-2.7)
P 		707.8
(0.4)
P 		500.7
(-1.9)
P 		665.7
(-0.1)
P 		948.1
(3)
P 		395.6
(-3)
P 		553
B 719
(-1.5)
P 		696.3
(-1.7)
P 		533.1
(-3)
P 		749.6
(-1.2)
P 		1274.4
(3)
P 		631.5
(-2.2)
P 		741
C 741
(-0.1)
P 		636
(-1.6)
P 		610.4
(-2)
P 		541.1
(-3)
P 		953.7
(3)
P 		601.3
(-2.1)
P 		413
avr 629.1
(-2) 		680
(-1.4) 		548.1
(-2.9) 		652.1
(-1.7) 		1058.7
(3) 		542.8
(-3) 		516
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182942_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7452
Sequence Type Exemplar sequence
Representative Public ID ZK1058.9 NCBI
Target Description ZK1058.9 /REP_DB=WormBase Gene ID /WP=CE01107 /TR=Q23385 /GB=CAA84682.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065391(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065391 NCBI Caenorhabditis elegans ZK1058.9 (ZK1058.9) mRNA, complete cds. 11/11 None
SNAP00000000035 ENSEMBL cdna:SNAP chromosome:CEL140:III:3923974:3926093:-1 11/11 None
GENEFINDER00000000039 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3923974:3925321:-1 11/11 None
ZK1058.9 ENSEMBL cdna:known chromosome:CEL140:III:3923767:3925453:-1 gene:ZK1058.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3923973-3925453(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1058.9
Entrez Gene 175508 Entrez gene
SwissProt Q23385 EMBL-EBI
WormBase CE01107 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84682 Hypothetical protein ZK1058.9 [Caenorhabditis elegans] ref|NP_497792.1| ZK1058.9 [Caenorhabditis elegans] 1.0E-165
blast CAA84682 Hypothetical protein ZK1058.9 [Caenorhabditis elegans] ref|NP_497792.1| ZK1058.9 [Caenorhabditis elegans] 1.0E-151
blast CAE60076 Hypothetical protein CBG03596 [Caenorhabditis briggsae] 1.0E-150
blast CAA84682 Hypothetical protein ZK1058.9 [Caenorhabditis elegans] ref|NP_497792.1| ZK1058.9 [Caenorhabditis elegans] 1.0E-149
blast CAE60076 Hypothetical protein CBG03596 [Caenorhabditis briggsae] 1.0E-138
blast CAE60076 Hypothetical protein CBG03596 [Caenorhabditis briggsae] 1.0E-136
Sequence
Target Sequence 
>C. ELEGANS:182942_AT
aagagatacgcttctcatgtccgtcgcagttacactccagttcgtgaaatttccgccgtc
aacaatgtgaacgacggaaatttgcatcgttcaagaactccattggcaaccgtaacagct
ccatatcacacaaacattcattatcgatcggaaaacgaaccattcaggaaatatgatgtt
tatggattgagaacctggagttatcctatttataaatatgtgtacggacgagagggagac
tacagacggccatattcatttgataggaattatggattaacacccagctacacgcctccg
cagttgaccgctgaaagtcgaccgataacaaccagacgaggatactccggctattcctat
cttgccaatgaaacacattatgacatcaccagccgcccgaaaagtttgagctcctacatg
tacagtaacaagtatctcggaaccacagctgccccatggtactggtcatgttatggaaac
agtggtcttcgtcacttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAGATACGCTTCTCATGTCCGTC 634 153 370 Antisense
TCGCAGTTACACTCCAGTTCGTGAA 591 597 393 Antisense
GAACTCCATTGGCAACCGTAACAGC 296 347 464 Antisense
GTAACAGCTCCATATCACACAAACA 570 461 481 Antisense
GAGACTACAGACGGCCATATTCATT 603 393 605 Antisense
CAGACGAGGATACTCCGGCTATTCC 582 203 702 Antisense
GGCTATTCCTATCTTGCCAATGAAA 491 537 718 Antisense
CACCAGCCGCCCGAAAAGTTTGAGC 92 203 756 Antisense
AAGTTTGAGCTCCTACATGTACAGT 373 157 771 Antisense
ACAAGTATCTCGGAACCACAGCTGC 100 115 797 Antisense
GAAACAGTGGTCTTCGTCACTTCAA 135 355 845 Antisense
Sequence Source Affymetrix Proprietary Database