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[182941_at]

Description M01H9.4 /REP_DB=WormBase Gene ID /WP=CE12310 /TR=Q94281 /GB=AAB09145.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1144
1 2 3 4 range
A 283.5
(-2.9)
P 		270.4
(-3)
M 		285
(-2.9)
A 		1328.5
(3)
P 		1058
B 316.4
(-2.6)
M 		298.4
(-2.8)
A 		271.7
(-3)
A 		969.8
(3)
P 		698
C 287.2
(-2.3)
P 		184.6
(-3)
A 		260.2
(-2.5)
M 		1035.7
(3)
P 		851
avr 295.7
(-2.7) 		251.1
(-3) 		272.3
(-2.9) 		1111.3
(3) 		860

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 244
1 2 3 4 5 6 range
A 209.2
(-2.6)
A 		274.4
(-1)
M 		438.5
(3)
P 		307.3
(-0.2)
A 		194.9
(-3)
A 		323.8
(0.2)
P 		244
B 215.6
(-3)
P 		253.3
(-1.6)
P 		231.1
(-2.4)
P 		260
(-1.4)
M 		379.2
(3)
A 		284.3
(-0.5)
P 		164
C 218
(-3)
M 		237.7
(-1.9)
M 		302.5
(1.8)
A 		299.4
(1.6)
P 		226.7
(-2.5)
A 		323.8
(3)
P 		106
avr 214.3
(-3) 		255.1
(-0.8) 		324
(3) 		288.9
(1.1) 		266.9
(-0.1) 		310.6
(2.3) 		110
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 103.2
(-1)
P 		58.7
(-3)
M 		74.5
(-2.3)
A 		194.5
(3)
P 		136
B 100.9
(-1.4)
M 		73.7
(-2.6)
A 		63
(-3)
A 		206.7
(3)
P 		144
C 95.1
(-0.9)
P 		53.1
(-3)
A 		90.7
(-1.1)
M 		174.6
(3)
P 		122
avr 99.7
(-1.3) 		61.8
(-3) 		76.1
(-2.3) 		191.9
(3) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 38.6
(-3)
A 		97.6
(3)
M 		95.5
(2.8)
P 		77.9
(1)
A 		58.8
(-0.9)
A 		78.8
(1.1)
P 		59
B 75
(-1.8)
P 		84.3
(-1.3)
P 		56.1
(-3)
P 		68.9
(-2.2)
M 		154
(3)
A 		106
(0.1)
P 		98
C 80.8
(-0.4)
M 		72.5
(-1.5)
M 		77
(-0.9)
A 		60.2
(-3)
P 		73.4
(-1.4)
A 		108.4
(3)
P 		48
avr 64.8
(-3) 		84.8
(0.6) 		76.2
(-0.9) 		69
(-2.2) 		95.4
(2.6) 		97.7
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182941_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10492
Sequence Type Exemplar sequence
Representative Public ID M01H9.4 NCBI
Target Description M01H9.4 /REP_DB=WormBase Gene ID /WP=CE12310 /TR=Q94281 /GB=AAB09145.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068176(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068176 NCBI Caenorhabditis elegans M01H9.4 (M01H9.4) mRNA, complete cds. 10/11 None
M01H9.4 ENSEMBL cdna:known chromosome:CEL140:IV:4479686:4482597:-1 gene:M01H9.4 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037485 4/11 Cross Hyb Matching Probes None
SNAP00000037486 6/11 Cross Hyb Matching Probes None
GENEFINDER00000037491 6/11 Cross Hyb Matching Probes None
GENEFINDER00000037494 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4479667-4482603(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M01H9.4
Entrez Gene 187391 Entrez gene
SwissProt Q94281 EMBL-EBI
WormBase CE34581 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB09145 Hypothetical protein M01H9.4 [Caenorhabditis elegans] ref|NP_500577.2| M01H9.4 [Caenorhabditis elegans] 1.0E-113
blast CAE58536 Hypothetical protein CBG01693 [Caenorhabditis briggsae] 2.0E-33
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500577.2 1 202-224
M01H9.4 1 202-224
Sequence
Target Sequence 
>C. ELEGANS:182941_AT
taaagacgaggcaaactccgcttccaccacaccatcatcttctagaagacagactcttag
tgctggagcagcgggccctcggcctatccgagttccacctcaatccatattcaacccaat
gcaattcggcatgatgcctctttcacagcaacaaattatcgaagagccaagtacctcgcc
gacaacgatgccacgtcagcaatccgatccgcacacttaccatatgccgagttttcagcg
agccgacgaggagatttatacggtaaggatttttggtgatttcatttctttgtcacgtgg
ccgagaaataaaaaatacacagccatctatttttaaaggacacaaaaaaacatttccaat
tttcagattctttgattccaactggatcagtactcttttttcggtgatcatcccgatttt
ggtttgggaacttttagtttttggagttctggctcccgatgaggtttttatggatgtatt
tggagaatataatgttccgattgacaatcgaagaatcgtatctccaactcagtcagttcg
cgatgttttggtttcttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAAGACGAGGCAAACTCCGCTTCC 242 641 270 Antisense
ACCACACCATCATCTTCTAGAAGAC 172 85 295 Antisense
GACAGACTCTTAGTGCTGGAGCAGC 231 367 317 Antisense
TTCGGCATGATGCCTCTTTCACAGC 661 691 394 Antisense
GACAACGATGCCACGTCAGCAATCC 71 365 450 Antisense
CATATGCCGAGTTTTCAGCGAGCCG 191 213 490 Antisense
GATTTCATTTCTTTGTCACGTGGCC 480 427 547 Antisense
GTACTCTTTTTTCGGTGATCATCCC 507 459 659 Antisense
TTTGGAGTTCTGGCTCCCGATGAGG 307 667 709 Antisense
ATCTCCAACTCAGTCAGTTCGCGAT 160 33 789 Antisense
AGTTCGCGATGTTTTGGTTTCTTCT 389 63 804 Antisense
Sequence Source Affymetrix Proprietary Database