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[182940_s_at]

Description K01D12.6 /REP_DB=WormBase Gene ID /WP=CE23842 /TR=Q21096 /GB=CAA99873.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 76      4grp_high_8_8 > 48      6grp_highest_nonorm > 82      6grp_total > 66      4grp_total > 63      6grp_highest_sub > Da      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 272
1 2 3 4 range
A 511.7
(3)
P 		298.2
(-3)
P 		441.9
(1)
P 		307.6
(-2.7)
M 		214
B 570
(3)
P 		374.4
(-1.6)
P 		371.7
(-1.7)
P 		315.5
(-3)
P 		255
C 565.4
(3)
P 		325
(-3)
P 		440.9
(-0.1)
P 		404.8
(-1)
P 		240
avr 549
(3) 		332.5
(-3) 		418.2
(-0.6) 		342.6
(-2.7) 		217

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 220
1 2 3 4 5 6 range
A 382.9
(-0.9)
P 		476.7
(2.1)
P 		358.5
(-1.7)
P 		388.1
(-0.7)
P 		316.7
(-3)
P 		506.2
(3)
P 		190
B 323.9
(-3)
P 		399.8
(-0)
P 		364.2
(-1.4)
P 		331.6
(-2.7)
P 		419.9
(0.8)
P 		477.2
(3)
P 		153
C 385.5
(-1.7)
P 		396.5
(-1.4)
P 		469.8
(0.9)
P 		345.7
(-3)
P 		405.7
(-1.1)
P 		536.4
(3)
P 		191
avr 364.1
(-2.6) 		424.3
(-0.3) 		397.5
(-1.3) 		355.1
(-3) 		380.8
(-2) 		506.6
(3) 		152
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 186.3
(3)
P 		64.7
(-2.2)
P 		115.5
(-0)
P 		45
(-3)
M 		141
B 181.8
(3)
P 		92.5
(-1.7)
P 		86.1
(-2)
P 		67.2
(-3)
P 		115
C 187.2
(3)
P 		93.4
(-1.7)
P 		153.7
(1.3)
P 		68.3
(-3)
P 		119
avr 185.1
(3) 		83.5
(-1.9) 		118.4
(-0.2) 		60.2
(-3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 70.6
(-3)
P 		169.6
(3)
P 		78.1
(-2.5)
P 		98.4
(-1.3)
P 		95.6
(-1.5)
P 		123.3
(0.2)
P 		99
B 112.7
(-1.3)
P 		133.1
(0)
P 		88.5
(-3)
P 		87.8
(-3)
P 		170.6
(2.5)
P 		178
(3)
P 		90
C 142.9
(1)
P 		121
(-0.2)
P 		119.6
(-0.3)
P 		69.5
(-3)
P 		131.3
(0.4)
P 		179.6
(3)
P 		110
avr 108.7
(-1.1) 		141.2
(1.5) 		95.4
(-2.2) 		85.2
(-3) 		132.5
(0.8) 		160.3
(3) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182940_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13012
Sequence Type Exemplar sequence
Representative Public ID K01D12.6 NCBI
Target Description K01D12.6 /REP_DB=WormBase Gene ID /WP=CE23842 /TR=Q21096 /GB=CAA99873.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073704(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073704 NCBI Caenorhabditis elegans K01D12.6 (K01D12.6) mRNA, complete cds. 11/11 None
SNAP00000007093 ENSEMBL cdna:SNAP chromosome:CEL140:V:12401544:12403353:-1 11/11 None
GENEFINDER00000007109 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12401544:12403353:-1 11/11 None
K01D12.6.1 ENSEMBL cdna:known chromosome:CEL140:V:12401412:12403506:-1 gene:K01D12.6 11/11 None
K01D12.6.2 ENSEMBL cdna:known chromosome:CEL140:V:12401436:12403440:-1 gene:K01D12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12401543-12403338(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K01D12.6
Entrez Gene 179700 Entrez gene
SwissProt Q21096 EMBL-EBI
WormBase CE31966 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99873 Hypothetical protein K01D12.6 [Caenorhabditis elegans] ref|NP_506105.2| K01D12.6 [Caenorhabditis elegans] 0.0
blast CAE75473 Hypothetical protein CBG23475 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506105.2 1 24-41
K01D12.6.1 1 24-41
K01D12.6.2 1 24-41
SNAP00000007093 1 24-41
GENEFINDER00000007109 1 24-41
Sequence
Target Sequence 
>C. ELEGANS:182940_S_AT
ttgcgaaatgtggccgaactctcctcgctgattttattcgtcacacgaaacaggatcctg
tgaagttctttaatgcctacgatgagatgctggaatatgtatcaaatgaccgtaatgaag
agcagctcagacaagacgtcgaaggccgaggtgtttgtgaaactggcttttatgatgtcg
caatcgattttattatcctcgatgcatttgaagacttaaaatcaccaccttctgcagttt
attccgtcaccaagaattattttatgtcgatgtccatgaagtactctactctcaacacta
tcatctggtctatcattaaatcaaagcgtcaaagactgaaaaatcctgatggttttattg
caaagttctacaatatatcggaaactgtgatgccggccatcactctcggctttttgggaa
ctgatgaacgcctcggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCGAAATGTGGCCGAACTCTCCT 443 701 938 Antisense
AACTCTCCTCGCTGATTTTATTCGT 246 141 954 Antisense
GAAGAGCAGCTCAGACAAGACGTCG 478 339 1054 Antisense
AACTGGCTTTTATGATGTCGCAATC 196 143 1098 Antisense
TAAAATCACCACCTTCTGCAGTTTA 620 639 1154 Antisense
TCTGCAGTTTATTCCGTCACCAAGA 330 609 1168 Antisense
GTCGATGTCCATGAAGTACTCTACT 200 473 1203 Antisense
TACTCTCAACACTATCATCTGGTCT 660 645 1224 Antisense
ATCGGAAACTGTGATGCCGGCCATC 425 35 1314 Antisense
CCATCACTCTCGGCTTTTTGGGAAC 27 271 1334 Antisense
TTGGGAACTGATGAACGCCTCGGAG 512 707 1351 Antisense
Sequence Source Affymetrix Proprietary Database