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[182939_at]

Description F38A5.8 /REP_DB=WormBase Gene ID /WP=CE10040 /TR=Q94208 /GB=AAB09154.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 54.9
(-1.2)
A 		19.9
(-3)
A 		73.8
(-0.2)
A 		136.6
(3)
P 		117
B 52.1
(-3)
A 		80.9
(3)
A 		74.7
(1.7)
A 		52.9
(-2.8)
A 		29
C 44.9
(-2.7)
A 		49.4
(-2.4)
A 		40.8
(-3)
P 		127.1
(3)
A 		86
avr 50.6
(-2.9) 		50.1
(-3) 		63.1
(-1.6) 		105.5
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 32.4
(-3)
A 		67
(1.8)
A 		51
(-0.4)
A 		58.9
(0.7)
A 		75.9
(3)
A 		59.2
(0.7)
A 		44
B 31.3
(-0.7)
A 		54.3
(2.6)
A 		14.7
(-3)
A 		29.8
(-0.9)
A 		57.4
(3)
A 		41.7
(0.8)
A 		43
C 55.8
(1.1)
A 		49.1
(-0.7)
A 		40.5
(-3)
A 		63
(3)
A 		41.6
(-2.7)
A 		43.8
(-2.1)
A 		23
avr 39.8
(-1.8) 		56.8
(2.6) 		35.4
(-3) 		50.6
(1) 		58.3
(3) 		48.2
(0.4) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 20
(3)
A 		4.3
(-3)
A 		19.3
(2.7)
A 		20
(3)
P 		16
B 16.6
(0.7)
A 		20
(3)
A 		17.3
(1.1)
A 		11.3
(-3)
A 		9
C 14.9
(-2.4)
A 		14.2
(-3)
A 		14.2
(-3)
P 		21.4
(3)
A 		7
avr 17.2
(2.5) 		12.8
(-3) 		16.9
(2.1) 		17.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 6
(-3)
A 		23.8
(3)
A 		11.1
(-1.3)
A 		14.9
(0)
A 		22.9
(2.7)
A 		14.4
(-0.2)
A 		18
B 10.9
(-0.8)
A 		18.1
(1.4)
A 		3.6
(-3)
A 		7.9
(-1.7)
A 		23.3
(3)
A 		15.6
(0.7)
A 		20
C 20.7
(3)
A 		15
(-0.3)
A 		10.3
(-3)
A 		12.7
(-1.6)
A 		13.5
(-1.2)
A 		14.7
(-0.5)
A 		10
avr 12.5
(-0.8) 		19
(2.5) 		8.3
(-3) 		11.8
(-1.2) 		19.9
(3) 		14.9
(0.4) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182939_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10594
Sequence Type Exemplar sequence
Representative Public ID F38A5.8 NCBI
Target Description F38A5.8 /REP_DB=WormBase Gene ID /WP=CE10040 /TR=Q94208 /GB=AAB09154.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068613(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068613 NCBI Caenorhabditis elegans F38A5.8 (F38A5.8) mRNA, complete cds. 11/11 None
SNAP00000010573 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6599866:6600475:1 11/11 None
GENEFINDER00000010575 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6599866:6600475:1 11/11 None
F38A5.8 ENSEMBL cdna:known chromosome:CEL140:IV:6599866:6600475:1 gene:F38A5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6599871-6600481(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F38A5.8
Entrez Gene 185444 Entrez gene
SwissProt Q94208 EMBL-EBI
WormBase CE10040 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB09154 Hypothetical protein F38A5.8 [Caenorhabditis elegans] ref|NP_501014.1| F38A5.8 [Caenorhabditis elegans] 6.0E-70
blast CAB03865 Hypothetical protein C09F9.1 [Caenorhabditis elegans] ref|NP_497052.1| C09F9.1 [Caenorhabditis elegans] 4.0E-30
blast CAE60623 Hypothetical protein CBG04266 [Caenorhabditis briggsae] emb|CAE56234.1| Hypothetical protein CBG23869 [Caenorhabditis briggsae] 5.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501014.1 1 89-111
F38A5.8 1 89-111
SNAP00000010573 1 89-111
GENEFINDER00000010575 1 89-111
Sequence
Target Sequence 
>C. ELEGANS:182939_AT
taattggtcccgtctattcggtgcctcctcttgcatcaccgatgcccacgatggttcctc
catcgccactcgcagtcactccaaaggttaaaaaggatgaagattctggatcaagtgcgg
cggagacgaccagagccggaaaacatcgaaaaaggacaaacgcctcagagtatgaagtga
gcaatatggagagcacccaccatgatgtagtttcgatcaagcacagaccaaactcgtgtg
acgtttgccacgtggcgactcttttgttcctgattgttatggtgatcgccatatcgactc
cagttctcctttctgcaagtaagggcggacttccatggatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATTGGTCCCGTCTATTCGGTGCC 216 625 35 Antisense
CACTCGCAGTCACTCCAAAGGTTAA 420 197 101 Antisense
GGATCAAGTGCGGCGGAGACGACCA 692 509 142 Antisense
GAGACGACCAGAGCCGGAAAACATC 294 393 157 Antisense
GAGCACCCACCATGATGTAGTTTCG 568 389 225 Antisense
TTTCGATCAAGCACAGACCAAACTC 608 665 245 Antisense
ACTCGTGTGACGTTTGCCACGTGGC 543 99 266 Antisense
CGACTCTTTTGTTCCTGATTGTTAT 173 251 290 Antisense
TATGGTGATCGCCATATCGACTCCA 70 655 312 Antisense
TCCAGTTCTCCTTTCTGCAAGTAAG 276 591 333 Antisense
AAGTAAGGGCGGACTTCCATGGATT 511 155 351 Antisense
Sequence Source Affymetrix Proprietary Database