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[182938_at] 7TM chemoreceptor, srx family

Description C14C6.9 /REP_DB=WormBase Gene ID /WP=CE08164 /TR=O44673 /GB=AAB94267.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 0      6grp_cgc > 99      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 6.3
(-2.5)
A 		3.5
(-3)
A 		38.6
(3)
A 		6.5
(-2.5)
A 		35
B 4.5
(-3)
A 		6.7
(-1.5)
A 		8.7
(-0.2)
A 		13.4
(3)
A 		9
C 3.9
(-2.9)
A 		2.4
(-3)
A 		4.2
(-2.8)
A 		69.4
(3)
A 		67
avr 4.9
(-2.8) 		4.2
(-3) 		17.2
(0) 		29.8
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 5.1
(-2.6)
A 		2.9
(-3)
A 		3.5
(-2.9)
A 		5.2
(-2.5)
A 		32.3
(3)
A 		5.9
(-2.4)
A 		29
B 7.2
(3)
A 		6.4
(2.1)
A 		2.4
(-2.4)
A 		3.9
(-0.7)
A 		4.3
(-0.3)
A 		1.9
(-3)
A 		5
C 1.8
(-3)
A 		4.8
(2.5)
A 		5.1
(3)
A 		1.8
(-3)
A 		3.7
(0.5)
A 		5.1
(3)
A 		3
avr 4.7
(-2.3) 		4.7
(-2.3) 		3.7
(-2.9) 		3.6
(-3) 		13.4
(3) 		4.3
(-2.6) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.3
(-2)
A 		0.8
(-3)
A 		10.1
(3)
A 		0.9
(-2.9)
A 		9
B 1.4
(-3)
A 		1.6
(-2.2)
A 		2
(-0.6)
A 		2.9
(3)
A 		2
C 1.3
(-2.7)
A 		0.7
(-3)
A 		1.5
(-2.6)
A 		11.7
(3)
A 		11
avr 1.7
(-2) 		1
(-3) 		4.5
(2) 		5.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.9
(-2.9)
A 		1
(-2.9)
A 		0.8
(-3)
A 		1.3
(-2.7)
A 		9.8
(3)
A 		1.4
(-2.6)
A 		9
B 2.5
(3)
A 		2.1
(1.7)
A 		0.6
(-3)
A 		1
(-1.7)
A 		1.7
(0.5)
A 		0.7
(-2.7)
A 		2
C 0.7
(-1.6)
A 		1.5
(2.1)
A 		1.3
(1.2)
A 		0.4
(-3)
A 		1.2
(0.7)
A 		1.7
(3)
A 		1
avr 1.4
(-2.1) 		1.5
(-1.9) 		0.9
(-3) 		0.9
(-3) 		4.2
(3) 		1.3
(-2.3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182938_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15399
Sequence Type Exemplar sequence
Representative Public ID C14C6.9 NCBI
Target Description C14C6.9 /REP_DB=WormBase Gene ID /WP=CE08164 /TR=O44673 /GB=AAB94267.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070843(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070843 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-8) (srx-8) mRNA, complete cds. 11/11 None
SNAP00000017697 ENSEMBL cdna:SNAP chromosome:CEL140:V:554203:554694:-1 9/11 None
GENEFINDER00000017706 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:554203:555984:-1 11/11 None
C14C6.9 ENSEMBL cdna:known chromosome:CEL140:V:554203:555984:-1 gene:C14C6.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:554202-556090(-) 96.56 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-8
Ensembl C14C6.9
Entrez Gene 182605 Entrez gene
SwissProt O44673 EMBL-EBI
WormBase CE36376 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB94267 Serpentine receptor, class x protein 8 [Caenorhabditis elegans] ref|NP_503244.2| Serpentine Receptor, class X family member (srx-8) [Caenorhabditis elegans] 1.0E-152
blast AAB94268 Serpentine receptor, class x protein 7 [Caenorhabditis elegans] ref|NP_503245.3| Serpentine Receptor, class X family member (srx-7) [Caenorhabditis elegans] 1.0E-124
blast AAB94267 Serpentine receptor, class x protein 8 [Caenorhabditis elegans] ref|NP_503244.2| Serpentine Receptor, class X family member (srx-8) [Caenorhabditis elegans] 6.0E-78
blast NP_504861 Serpentine Receptor, class X family member (srx-6) [Caenorhabditis elegans] gb|AAG24053.1| Serpentine receptor, class x protein 6 [Caenorhabditis elegans] 2.0E-73
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503244.2 8 12-34,40-62,83-105,120-142,144-166,176-198,219-241,251-273
C14C6.9 8 12-34,40-62,83-105,120-142,144-166,176-198,219-241,251-273
SNAP00000017697 3 20-42,63-85,95-117
GENEFINDER00000017706 8 12-34,40-62,83-105,120-142,144-166,176-198,219-241,251-273
Sequence
Target Sequence 
>C. ELEGANS:182938_AT
aagacgtgttcacattctaccgtacaatttttatcttcatcctaatcattgcagtggctt
cagccgcagccacgttttcacagtacatcttcccatgttgcatatttgttggcgatattt
caataatgtcgtatatggctgtcactattccaaatgtgtattcatactcgaagcttatca
tactctcatttgacttgttttgcacagggatttcaacggtttgctatgcgtcagttttca
tcaccatccgaaacgcgagcaagggtattgaagacgctgcaaacagcaaaaagagaaaac
aagataccagataccttctacaatttgtgttcatctcaggtttttatatcgctgcttggt
ctctattctacgttttgccgtatatagtgccagctgacaagccgatattttacaccgtgg
ttccattcttcatcactctcaacggatcttccaactcgatcatcttccttacttataaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACGTGTTCACATTCTACCGTAC 514 147 404 Antisense
ACCGTACAATTTTTATCTTCATCCT 357 89 422 Antisense
ACTCGAAGCTTATCATACTCTCATT 639 99 569 Antisense
ACTCTCATTTGACTTGTTTTGCACA 209 101 585 Antisense
TGCTATGCGTCAGTTTTCATCACCA 520 579 625 Antisense
TCATCACCATCCGAAACGCGAGCAA 398 619 641 Antisense
GGTTTTTATATCGCTGCTTGGTCTC 146 507 742 Antisense
TTTGCCGTATATAGTGCCAGCTGAC 220 669 777 Antisense
TTTACACCGTGGTTCCATTCTTCAT 657 671 812 Antisense
AACGGATCTTCCAACTCGATCATCT 48 145 844 Antisense
TCGATCATCTTCCTTACTTATAACA 540 603 859 Antisense
Sequence Source Affymetrix Proprietary Database