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[182937_at] 7TM chemoreceptor, srsx family

Description F20A1.3 /REP_DB=WormBase Gene ID /WP=CE07093 /TR=Q19607 /GB=AAA96123.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 13      6grp_cgc > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 5.8
(-3)
A 		12.3
(-1.3)
A 		13.3
(-1)
A 		28.5
(3)
A 		23
B 27.9
(3)
A 		2.7
(-3)
A 		4.1
(-2.7)
A 		2.8
(-3)
A 		25
C 18.4
(-0.9)
A 		9.1
(-2.2)
A 		3.3
(-3)
A 		45.6
(3)
A 		42
avr 17.4
(0.4) 		8
(-2.6) 		6.9
(-3) 		25.6
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 11.4
(3)
A 		8.3
(0.9)
A 		2.5
(-3)
A 		2.7
(-2.9)
A 		3.1
(-2.6)
A 		4
(-2)
A 		9
B 7.6
(-1.5)
A 		8
(-1.4)
A 		10.5
(-0.7)
A 		2.9
(-2.8)
A 		23.7
(3)
A 		2.1
(-3)
A 		22
C 7.8
(1)
A 		9.3
(1.9)
A 		5.6
(-0.4)
A 		11
(3)
A 		1.6
(-3)
A 		3.2
(-2)
A 		9
avr 8.9
(2.4) 		8.5
(2.1) 		6.2
(-0.1) 		5.5
(-0.8) 		9.5
(3) 		3.1
(-3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.1
(-3)
A 		2.7
(-1.3)
A 		3.5
(1)
A 		4.2
(3)
A 		2
B 8.9
(3)
A 		0.7
(-2.9)
A 		0.9
(-2.8)
A 		0.6
(-3)
A 		8
C 6.1
(1.5)
A 		2.6
(-1.6)
A 		1.1
(-3)
A 		7.7
(3)
A 		7
avr 5.7
(3) 		2
(-2.7) 		1.8
(-3) 		4.2
(0.7) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.1
(0.8)
A 		3
(3)
A 		0.5
(-3)
A 		0.7
(-2.5)
A 		0.9
(-2)
A 		1
(-1.8)
A 		3
B 2.7
(-1.7)
A 		2.7
(-1.7)
A 		2.6
(-1.8)
A 		0.8
(-3)
A 		9.6
(3)
A 		0.8
(-3)
A 		9
C 2.9
(3)
A 		2.8
(2.8)
A 		1.4
(-0.8)
A 		2.2
(1.3)
A 		0.5
(-3)
A 		1.1
(-1.5)
A 		2
avr 2.6
(0.6) 		2.8
(1) 		1.5
(-1.9) 		1.2
(-2.6) 		3.7
(3) 		1
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182937_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12091
Sequence Type Exemplar sequence
Representative Public ID F20A1.3 NCBI
Target Description F20A1.3 /REP_DB=WormBase Gene ID /WP=CE07093 /TR=Q19607 /GB=AAA96123.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072377(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072377 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-32) (srsx-32) mRNA, complete cds. 11/11 None
SNAP00000026797 ENSEMBL cdna:SNAP chromosome:CEL140:V:7020322:7021444:1 11/11 None
GENEFINDER00000026811 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7019952:7021444:1 11/11 None
F20A1.3 ENSEMBL cdna:known chromosome:CEL140:V:7019952:7021444:1 gene:F20A1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7019952-7021445(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srsx family
Gene Symbol srsx-32
Ensembl F20A1.3
Entrez Gene 184705 Entrez gene
SwissProt Q19607 EMBL-EBI
WormBase CE38172 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504778 Serpentine Receptor, class SX family member (srsx-32) [Caenorhabditis elegans] gb|AAA96123.2| Hypothetical protein F20A1.3 [Caenorhabditis elegans] 1.0E-172
blast NP_504778 Serpentine Receptor, class SX family member (srsx-32) [Caenorhabditis elegans] gb|AAA96123.2| Hypothetical protein F20A1.3 [Caenorhabditis elegans] 1.0E-162
blast CAE72037 Hypothetical protein CBG19119 [Caenorhabditis briggsae] 1.0E-135
blast CAE72037 Hypothetical protein CBG19119 [Caenorhabditis briggsae] 1.0E-125
blast NP_504778 Serpentine Receptor, class SX family member (srsx-32) [Caenorhabditis elegans] gb|AAA96123.2| Hypothetical protein F20A1.3 [Caenorhabditis elegans] 1.0E-113
blast CAE75202 Hypothetical protein CBG23149 [Caenorhabditis briggsae] 2.0E-88
blast CAE72037 Hypothetical protein CBG19119 [Caenorhabditis briggsae] 5.0E-81
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504778.2 7 13-35,48-70,81-103,124-146,174-196,209-231,241-263
F20A1.3 6 13-35,45-67,182-204,233-255,268-290,300-322
SNAP00000026797 4 32-54,82-104,117-139,149-171
GENEFINDER00000026811 7 13-35,48-70,81-103,124-146,174-196,209-231,241-263
Sequence
Target Sequence 
>C. ELEGANS:182937_AT
cgtccgaatctgtacgtgtgcgggcaattgattcttccaacagcttactcatcatttctc
atggtatctggttttctacaaagagatactgtaacacaaatatattgcgcagttcctgca
gcgtttgctggcaccgcattttccaaatttaatacgagtgggatatttatcaacatagca
attgtgatagtttattttttcacctttctccaactccgcacctacgcaggagctactcaa
atgaaagtcgtgttccgctcgattctttggacagtgatattcgtgataattggctggagt
agtgtgaccattgcaaatcagtttgctatatttgcaaaagatgcagctactcggaagctc
atttctatttacgctggaatcggtgttaatctcgcttgcgccagtaatatttttgttttc
tacgccatcaacacggaatatcgaaatgcgattcggcgcctttttggcttatccagcagt
ctctctaatcgtgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTCCGAATCTGTACGTGTGCGGGC 583 245 550 Antisense
GTGTGCGGGCAATTGATTCTTCCAA 636 487 565 Antisense
ATTCTTCCAACAGCTTACTCATCAT 633 9 580 Antisense
TATATTGCGCAGTTCCTGCAGCGTT 617 661 650 Antisense
GCACCTACGCAGGAGCTACTCAAAT 434 313 767 Antisense
TGTTCCGCTCGATTCTTTGGACAGT 66 563 800 Antisense
GAATCGGTGTTAATCTCGCTTGCGC 332 327 926 Antisense
GTTTTCTACGCCATCAACACGGAAT 401 447 964 Antisense
AAATGCGATTCGGCGCCTTTTTGGC 484 119 993 Antisense
CGCCTTTTTGGCTTATCCAGCAGTC 639 257 1006 Antisense
TCCAGCAGTCTCTCTAATCGTGCAA 93 591 1021 Antisense
Sequence Source Affymetrix Proprietary Database