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[182936_at]

Description B0222.1 /REP_DB=WormBase Gene ID /WP=CE06692 /TR=Q17453 /GB=AAA92318.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 27      4grp_total > 13      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 375
1 2 3 4 range
A 257.8
(0.4)
A 		116.2
(-1.8)
A 		44.2
(-3)
A 		418.7
(3)
P 		375
B 231.7
(0.3)
A 		161
(-1)
A 		55.2
(-3)
A 		372.3
(3)
P 		317
C 238.5
(-0.1)
A 		119.5
(-2.4)
A 		88.2
(-3)
A 		397.8
(3)
P 		310
avr 242.7
(0.2) 		132.2
(-1.7) 		62.5
(-3) 		396.3
(3) 		334

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 274
1 2 3 4 5 6 range
A 286.4
(3)
A 		121.2
(-0.6)
A 		111.1
(-0.8)
A 		82.4
(-1.5)
A 		12.5
(-3)
A 		147.6
(-0)
A 		274
B 184.6
(3)
A 		156.1
(1.8)
A 		90.9
(-1.1)
A 		47.3
(-3)
A 		88.4
(-1.2)
A 		148.9
(1.4)
A 		137
C 196.9
(3)
A 		158.5
(1.7)
A 		96.2
(-0.4)
A 		19.3
(-3)
A 		100.9
(-0.2)
A 		138.9
(1)
A 		178
avr 222.6
(3) 		145.3
(0.3) 		99.4
(-1.3) 		49.7
(-3) 		67.3
(-2.4) 		145.1
(0.3) 		173
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 93.9
(3)
A 		25.2
(-2)
A 		11.5
(-3)
A 		61.3
(0.6)
P 		82
B 73.9
(2.5)
A 		39.8
(-0.6)
A 		12.8
(-3)
A 		79.3
(3)
P 		67
C 79
(3)
A 		34.4
(-2.5)
A 		30.7
(-3)
A 		67.1
(1.5)
P 		48
avr 82.3
(3) 		33.1
(-1.6) 		18.3
(-3) 		69.2
(1.8) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 52.8
(3)
A 		43.1
(1.8)
A 		24.2
(-0.5)
A 		20.9
(-0.9)
A 		3.8
(-3)
A 		35.9
(0.9)
A 		49
B 64.2
(3)
A 		52
(1.6)
A 		22.1
(-1.9)
A 		12.5
(-3)
A 		35.9
(-0.3)
A 		55.5
(2)
A 		52
C 73
(3)
A 		48.4
(0.9)
A 		24.5
(-1.2)
A 		3.9
(-3)
A 		32.6
(-0.5)
A 		46.5
(0.7)
A 		69
avr 63.3
(3) 		47.8
(1.2) 		23.6
(-1.7) 		12.4
(-3) 		24.1
(-1.6) 		46
(1) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182936_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11753
Sequence Type Exemplar sequence
Representative Public ID B0222.1 NCBI
Target Description B0222.1 /REP_DB=WormBase Gene ID /WP=CE06692 /TR=Q17453 /GB=AAA92318.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072968(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072968 NCBI Caenorhabditis elegans B0222.1 (B0222.1) mRNA, complete cds. 11/11 None
SNAP00000023004 ENSEMBL cdna:SNAP chromosome:CEL140:V:9136885:9137933:1 11/11 None
GENEFINDER00000023022 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9136885:9137933:1 11/11 None
B0222.1 ENSEMBL cdna:known chromosome:CEL140:V:9136885:9138001:1 gene:B0222.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9136885-9137934(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0222.1
Entrez Gene 181856 Entrez gene
SwissProt Q17453 EMBL-EBI
WormBase CE06692 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA92318 Hypothetical protein B0222.1 [Caenorhabditis elegans] ref|NP_505369.1| B0222.1 [Caenorhabditis elegans] 6.0E-65
blast CAE72110 Hypothetical protein CBG19203 [Caenorhabditis briggsae] 5.0E-44
blast AAC67454 Hypothetical protein F53C3.3 [Caenorhabditis elegans] ref|NP_494691.2| F53C3.3 [Caenorhabditis elegans] 4.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR002619 EMBL-EBI Protein of unknown function CX 1.8E-40
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505369.1 1 178-200
B0222.1 1 178-200
SNAP00000023004 1 178-200
GENEFINDER00000023022 1 178-200
Sequence
Target Sequence 
>C. ELEGANS:182936_AT
acaaccatgttctcatattctccactgactcatacacacgtcatcatctcaccagtatct
ccaatgatttacggcaattaccattactactggggagggcattatgtgcatactccagag
agaccgcacatgtgtgaatatcaaataacagatgacgaccaagaattaagaaatgtgaca
ttctctaatggcacaaaaccaacaaccctaacctttggatgtacgagctctgaatcttgt
tgtggaatggagtgttgctcgaatacatcatgggtaactataattctcattatcgtggga
attgtactgattataattctgtgcgtgtggtgcaacagtaaaggatattgtcgagacgaa
acagttattgtaacagaagtaccagtatttgcaacgacaacaaccacccatacattcaca
acaaacaacggtccaccaccacctccaggatttcaaggatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAACCATGTTCTCATATTCTCCAC 518 113 280 Antisense
ATATTCTCCACTGACTCATACACAC 390 19 294 Antisense
ATCATCTCACCAGTATCTCCAATGA 7 31 322 Antisense
GAGGGCATTATGTGCATACTCCAGA 82 403 374 Antisense
TACTCCAGAGAGACCGCACATGTGT 271 645 390 Antisense
CCCTAACCTTTGGATGTACGAGCTC 2 261 485 Antisense
GTACGAGCTCTGAATCTTGTTGTGG 228 459 500 Antisense
GATTATAATTCTGTGCGTGTGGTGC 10 429 588 Antisense
GTATTTGCAACGACAACAACCACCC 445 449 664 Antisense
TTCACAACAAACAACGGTCCACCAC 211 685 694 Antisense
CACCACCTCCAGGATTTCAAGGATT 106 203 716 Antisense
Sequence Source Affymetrix Proprietary Database