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[182935_at]

Description F36A4.3 /REP_DB=WormBase Gene ID /WP=CE07179 /TR=Q20094 /GB=AAA96162.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 12      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 5.5
(0.9)
A 		7.2
(3)
A 		2.4
(-3)
A 		5.7
(1.1)
A 		5
B 25.1
(3)
A 		4.5
(-2.4)
A 		3
(-2.8)
A 		2.3
(-3)
A 		23
C 5.1
(-2.6)
A 		5.9
(-2.5)
A 		1.1
(-3)
A 		63.6
(3)
A 		63
avr 11.9
(-0.3) 		5.9
(-2) 		2.2
(-3) 		23.9
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 3.1
(-2.8)
A 		1.2
(-3)
A 		20.8
(-1.5)
A 		1.6
(-3)
A 		18.8
(-1.6)
A 		77.1
(3)
P 		76
B 4.5
(-3)
A 		5.2
(-2.9)
A 		8.6
(-2.5)
A 		4.5
(-3)
A 		56.2
(3)
A 		42.5
(1.4)
P 		52
C 3.8
(-3)
A 		8.2
(-2.6)
A 		22.9
(-1.3)
A 		25.9
(-1.1)
A 		7.9
(-2.6)
A 		72
(3)
P 		68
avr 3.8
(-3) 		4.9
(-2.9) 		17.4
(-1.6) 		10.7
(-2.3) 		27.6
(-0.6) 		63.9
(3) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2
(3)
A 		1.6
(1.3)
A 		0.6
(-3)
A 		0.8
(-2.1)
A 		1
B 8
(3)
A 		1.1
(-2.5)
A 		0.7
(-2.8)
A 		0.5
(-3)
A 		8
C 1.7
(-2.2)
A 		1.7
(-2.2)
A 		0.4
(-3)
A 		10.7
(3)
A 		10
avr 3.9
(2.8) 		1.5
(-1.4) 		0.6
(-3) 		4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 0.6
(-2.9)
A 		0.4
(-3)
A 		4.5
(-1.7)
A 		0.4
(-3)
A 		5.7
(-1.3)
A 		18.8
(3)
P 		18
B 1.6
(-2.9)
A 		1.7
(-2.9)
A 		2.1
(-2.8)
A 		1.2
(-3)
A 		22.8
(3)
A 		15.9
(1.1)
P 		22
C 1.4
(-3)
A 		2.5
(-2.7)
A 		5.8
(-1.8)
A 		5.2
(-2)
A 		2.6
(-2.7)
A 		24.1
(3)
P 		23
avr 1.2
(-3) 		1.5
(-2.9) 		4.1
(-2.1) 		2.3
(-2.6) 		10.4
(0) 		19.6
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182935_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10593
Sequence Type Exemplar sequence
Representative Public ID F36A4.3 NCBI
Target Description F36A4.3 /REP_DB=WormBase Gene ID /WP=CE07179 /TR=Q20094 /GB=AAA96162.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068126(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068126 NCBI Caenorhabditis elegans F36A4.3 (F36A4.3) mRNA, complete cds. 11/11 None
SNAP00000033268 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4269726:4270179:1 11/11 None
GENEFINDER00000033285 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4267624:4270179:1 11/11 None
F36A4.3 ENSEMBL cdna:known chromosome:CEL140:IV:4269726:4270179:1 gene:F36A4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4269731-4270185(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36A4.3
Entrez Gene 185340 Entrez gene
SwissProt Q20094 EMBL-EBI
WormBase CE07179 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96161 Hypothetical protein F36A4.4 [Caenorhabditis elegans] ref|NP_500526.1| F36A4.4 [Caenorhabditis elegans] 1.0E-74
blast AAA96162 Hypothetical protein F36A4.3 [Caenorhabditis elegans] ref|NP_500527.1| F36A4.3 [Caenorhabditis elegans] 6.0E-68
blast AAA96162 Hypothetical protein F36A4.3 [Caenorhabditis elegans] ref|NP_500527.1| F36A4.3 [Caenorhabditis elegans] 3.0E-67
blast AAA96163 Hypothetical protein F36A4.2 [Caenorhabditis elegans] ref|NP_500528.1| F36A4.2 [Caenorhabditis elegans] 4.0E-34
blast AAA96161 Hypothetical protein F36A4.4 [Caenorhabditis elegans] ref|NP_500526.1| F36A4.4 [Caenorhabditis elegans] 5.0E-33
blast AAA96163 Hypothetical protein F36A4.2 [Caenorhabditis elegans] ref|NP_500528.1| F36A4.2 [Caenorhabditis elegans] 2.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR008588 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF870 3.0E-81
Pfam IPR008588 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF870 2.7E-73
Pfam IPR008588 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF870 3.0E-81
Sequence
Target Sequence 
>C. ELEGANS:182935_AT
gagcaagatgtagtgtttcccgatttgctgagaattgatagattctgcacgtcaaaaagt
aaaaagatgttcaggttcgatgtctaccctgggagtgactttcctacagttgacctcgag
ctcacctacaaattcaatcataattgctctgcggatggagaaacgtattgtgtgaagcct
aagtggtcgaaaaaagtgaatggacgtgtcggtcaaagtgtaggcttcgacatcgatgct
cgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCAAGATGTAGTGTTTCCCGATT 404 391 79 Antisense
TGTAGTGTTTCCCGATTTGCTGAGA 535 559 87 Antisense
GATAGATTCTGCACGTCAAAAAGTA 218 411 115 Antisense
GATGTTCAGGTTCGATGTCTACCCT 142 409 144 Antisense
ATGTCTACCCTGGGAGTGACTTTCC 361 47 158 Antisense
GAGTGACTTTCCTACAGTTGACCTC 254 401 171 Antisense
CCTCGAGCTCACCTACAAATTCAAT 596 267 192 Antisense
CAATCATAATTGCTCTGCGGATGGA 537 181 213 Antisense
AACGTATTGTGTGAAGCCTAAGTGG 176 139 240 Antisense
GACGTGTCGGTCAAAGTGTAGGCTT 47 377 281 Antisense
GTAGGCTTCGACATCGATGCTCGTC 438 455 298 Antisense
Sequence Source Affymetrix Proprietary Database