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[182933_at]

Description C24B5.4 /REP_DB=WormBase Gene ID /WP=CE06862 /TR=Q18131 /GB=AAA96122.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 51      6grp_highest_nonorm > 43      6grp_total > 51      4grp_total > 52      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 655
1 2 3 4 range
A 496.3
(1.5)
P 		615.1
(3)
P 		547.1
(2.2)
P 		125.5
(-3)
A 		490
B 507.4
(1)
P 		702
(3)
P 		455.4
(0.5)
P 		103.6
(-3)
M 		598
C 540.9
(2.6)
P 		578.2
(3)
P 		518.7
(2.3)
P 		47.2
(-3)
A 		531
avr 514.9
(1.7) 		631.8
(3) 		507.1
(1.6) 		92.1
(-3) 		540

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 945
1 2 3 4 5 6 range
A 1131.4
(-0.2)
P 		1069.5
(-0.6)
P 		1632.8
(3)
P 		1592.1
(2.7)
P 		994.7
(-1.1)
P 		687.7
(-3)
P 		945
B 935.6
(-1.7)
P 		1006.5
(-1.1)
P 		1555.2
(3)
P 		1187.1
(0.2)
P 		1014.9
(-1.1)
P 		758.3
(-3)
P 		797
C 919.1
(-1.7)
P 		1029.6
(-0.8)
P 		1503.6
(3)
P 		1468.6
(2.7)
P 		900.9
(-1.9)
P 		763.1
(-3)
P 		741
avr 995.4
(-1.1) 		1035.2
(-0.8) 		1563.9
(3) 		1415.9
(1.9) 		970.2
(-1.3) 		736.4
(-3) 		828
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 180.7
(3)
P 		133.5
(1.3)
P 		143
(1.6)
P 		18.4
(-3)
A 		162
B 161.8
(2.5)
P 		173.4
(3)
P 		105.5
(0.3)
P 		22.1
(-3)
M 		151
C 179
(2.9)
P 		166.2
(2.5)
P 		180.8
(3)
P 		8
(-3)
A 		173
avr 173.8
(3) 		157.7
(2.4) 		143.1
(1.8) 		16.2
(-3) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 245
1 2 3 4 5 6 range
A 208.6
(-2)
P 		380.4
(2.4)
P 		355.6
(1.8)
P 		403.8
(3)
P 		300.2
(0.4)
P 		167.4
(-3)
P 		236
B 325.5
(-1)
P 		335
(-0.6)
P 		377.7
(1.4)
P 		314.4
(-1.5)
P 		412.3
(3)
P 		282.8
(-3)
P 		130
C 340.7
(1)
P 		314.2
(-0.2)
P 		382.7
(3)
P 		295.3
(-1.1)
P 		291.5
(-1.3)
P 		255.5
(-3)
P 		127
avr 291.6
(-0.5) 		343.2
(1.7) 		372
(3) 		337.8
(1.5) 		334.7
(1.4) 		235.2
(-3) 		137
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182933_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12317
Sequence Type Exemplar sequence
Representative Public ID C24B5.4 NCBI
Target Description C24B5.4 /REP_DB=WormBase Gene ID /WP=CE06862 /TR=Q18131 /GB=AAA96122.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072981(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072981 NCBI Caenorhabditis elegans C24B5.4 (C24B5.4) mRNA, complete cds. 11/11 None
C24B5.4 ENSEMBL cdna:known chromosome:CEL140:V:9198439:9199809:-1 gene:C24B5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9198536-9199282(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C24B5.4
Entrez Gene 182835 Entrez gene
WormBase CE37611 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1590062_AT similar to CG9119-PA cfa
CANINE:1588699_AT similar to CG9119-PA cfa
CANINE_2:CFA.15607.1.A1_AT similar to CG9119-PA cfa
CANINE_2:CFA.20214.1.S1_AT similar to CG9119-PA cfa
CANINE_2:CFAAFFX.7248.1.S1_AT similar to CG9119-PA cfa
CANINE_2:CFAAFFX.7251.1.S1_S_AT similar to CG9119-PA cfa
DROSOPHILA_2:1625265_AT dm
DROSGENOME1:152102_AT dm
CHICKEN:GGA.7620.2.S1_A_AT similar to hypothetical protein gga
HU35KSUBB:RC_N68974_AT PTD012 protein hs
U133_X3P:HS.324136.1.A1_3P_S_AT PTD012 protein hs
U133_X3P:229851_3P_S_AT PTD012 protein hs
HG-U133_PLUS_2:223268_AT PTD012 protein hs
HG-U133B:223268_AT PTD012 protein hs
HG-U133_PLUS_2:229851_S_AT PTD012 protein hs
HG-U133B:229851_S_AT PTD012 protein hs
HG-U95B:46312_AT PTD012 protein hs
HG-U95C:66003_AT PTD012 protein hs
HG-U95E:85720_AT PTD012 protein hs
U133_X3P:HS2.351722.1.S1_3P_X_AT PTD012 protein hs
U133_X3P:HS.8360.0.S3_3P_AT PTD012 protein hs
U133_X3P:1559623_3P_AT PTD012 protein hs
HG-U133_PLUS_2:1559623_AT PTD012 protein hs
HG-U95D:86279_AT PTD012 protein hs
HG-U133_PLUS_2:238946_AT PTD012 protein hs
HG-U133B:238946_AT PTD012 protein hs
HG-U95D:76573_AT PTD012 protein hs
HU35KSUBD:RC_N39337_AT PTD012 protein hs
HU35KSUBD:RC_AA400030_AT PTD012 protein hs
U133_X3P:HS.123443.0.A1_3P_AT PTD012 protein hs
MOE430A:1454067_A_AT RIKEN cDNA 4931406C07 gene mm
MOUSE430A_2:1454067_A_AT RIKEN cDNA 4931406C07 gene mm
MOUSE430_2:1454067_A_AT RIKEN cDNA 4931406C07 gene mm
MG-U74AV2:96090_G_AT RIKEN cDNA 4931406C07 gene mm
MG-U74AV2:96091_AT RIKEN cDNA 4931406C07 gene mm
MG-U74AV2:96089_AT RIKEN cDNA 4931406C07 gene mm
MOE430A:1416607_AT RIKEN cDNA 4931406C07 gene mm
MOUSE430A_2:1416607_AT RIKEN cDNA 4931406C07 gene mm
MOUSE430_2:1416607_AT RIKEN cDNA 4931406C07 gene mm
MU19KSUBA:TC24627_AT RIKEN cDNA 4931406C07 gene (4931406C07Rik), mRNA mm
MU19KSUBB:TC32483_AT RIKEN cDNA 4931406C07 gene (4931406C07Rik), mRNA mm
RG-U34A:RC_AA892561_AT similar to RIKEN cDNA 4931406C07 (predicted) rn
RG-U34C:RC_AI232294_AT similar to RIKEN cDNA 4931406C07 (predicted) rn
RAE230A:1371763_AT similar to RIKEN cDNA 4931406C07 (predicted) rn
RAT230_2:1371763_AT similar to RIKEN cDNA 4931406C07 (predicted) rn
RAE230B:1385359_AT Similar to RIKEN cDNA 4931406C07 (predicted) rn
RAT230_2:1385359_AT Similar to RIKEN cDNA 4931406C07 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast NP_505382 C24B5.4 [Caenorhabditis elegans] 0.0
blast AAZ82856 Hypothetical protein C24B5.4 [Caenorhabditis elegans] 1.0E-170
blast CAE72127 Hypothetical protein CBG19223 [Caenorhabditis briggsae] 1.0E-155
Sequence
Target Sequence 
>C. ELEGANS:182933_AT
aagtcatccactgttgttcatttcaaagcatccgtaagaaagggagagaaaaacttgacc
aattgtattagagatggacttcaagagcattttgggaaaaaaattgtttcgttggctggt
caattcataatccaaaccggaaaagctagactccacgtgatgccagattttccaggctgt
ccattcgaaaataatgcggaagttgataaatggctcaactattttgaaatgagtgctcca
ttaatctgtgccaccgtcatgcactcttatgatccgggtcataatttgagattagagcat
actcattgttacagtgatcatggagatgccggtcattatcattatgatgttactcctgaa
actgtgtcttatgagggttggtttgctccggcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTCATCCACTGTTGTTCATTTCA 358 157 160 Antisense
GTTTCGTTGGCTGGTCAATTCATAA 411 451 265 Antisense
GAAAAGCTAGACTCCACGTGATGCC 351 353 299 Antisense
TCCACGTGATGCCAGATTTTCCAGG 603 587 311 Antisense
AGATTTTCCAGGCTGTCCATTCGAA 198 65 324 Antisense
TGAGTGCTCCATTAATCTGTGCCAC 13 569 389 Antisense
TTAATCTGTGCCACCGTCATGCACT 493 683 400 Antisense
GTCATGCACTCTTATGATCCGGGTC 161 467 415 Antisense
GGAGATGCCGGTCATTATCATTATG 280 519 481 Antisense
GATGTTACTCCTGAAACTGTGTCTT 333 409 505 Antisense
TTATGAGGGTTGGTTTGCTCCGGCG 614 665 528 Antisense
Sequence Source Affymetrix Proprietary Database