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[182932_at]

Description T26A5.6 /REP_DB=WormBase Gene ID /WP=CE00785 /TR=Q22794 /GB=AAC77509.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 65      6grp_total > 65      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 216
(3)
P 		107.9
(-3)
A 		137.5
(-1.4)
A 		180.1
(1)
M 		108
B 172.2
(3)
P 		130.7
(-3)
A 		150.9
(-0.1)
A 		150
(-0.2)
P 		42
C 168.4
(-3)
P 		173.1
(-2.2)
A 		204.4
(3)
A 		204.1
(3)
P 		36
avr 185.5
(3) 		137.2
(-3) 		164.3
(0.4) 		178.1
(2.1) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 119.8
(-3)
A 		232.3
(0.9)
P 		285.7
(2.7)
P 		234
(0.9)
P 		206.3
(-0)
P 		293.5
(3)
P 		174
B 284.3
(0.5)
P 		257.9
(-0.6)
P 		328.6
(2.3)
P 		286.9
(0.6)
P 		198.6
(-3)
P 		346.8
(3)
P 		148
C 167.1
(-3)
P 		222.1
(-1.2)
P 		196
(-2)
P 		222.8
(-1.2)
P 		168.1
(-3)
P 		348
(3)
P 		181
avr 190.4
(-3) 		237.4
(-1) 		270.1
(0.4) 		247.9
(-0.5) 		191
(-3) 		329.4
(3) 		139
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 78.7
(3)
P 		23.4
(-3)
A 		36
(-1.6)
A 		26.4
(-2.7)
M 		55
B 54.9
(3)
P 		32.3
(-2.9)
A 		35
(-2.2)
A 		32
(-3)
P 		23
C 55.7
(0.5)
P 		49.8
(-0.5)
A 		71.2
(3)
A 		34.4
(-3)
P 		37
avr 63.1
(3) 		35.2
(-2.2) 		47.4
(0.1) 		30.9
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 22.1
(-3)
A 		82.6
(3)
P 		62.2
(1)
P 		59.3
(0.7)
P 		62.3
(1)
P 		71.5
(1.9)
P 		61
B 98.9
(-0.4)
P 		85.8
(-1.9)
P 		79.8
(-2.6)
P 		76
(-3)
P 		80.7
(-2.5)
P 		129.3
(3)
P 		53
C 62
(-1.6)
P 		67.8
(-1.1)
P 		49.9
(-2.6)
P 		44.8
(-3)
P 		54.4
(-2.2)
P 		116.5
(3)
P 		72
avr 61
(-2.9) 		78.7
(-0.6) 		64
(-2.5) 		60
(-3) 		65.8
(-2.2) 		105.8
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182932_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8100
Sequence Type Exemplar sequence
Representative Public ID T26A5.6 NCBI
Target Description T26A5.6 /REP_DB=WormBase Gene ID /WP=CE00785 /TR=Q22794 /GB=AAC77509.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066015(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066015 NCBI Caenorhabditis elegans T26A5.6 (T26A5.6) mRNA, complete cds. 11/11 None
SNAP00000033257 ENSEMBL cdna:SNAP chromosome:CEL140:III:6448267:6450622:-1 11/11 None
GENEFINDER00000033292 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6448267:6450667:-1 11/11 None
T26A5.6.1 ENSEMBL cdna:known chromosome:CEL140:III:6448012:6450633:-1 gene:T26A5.6 11/11 None
T26A5.6.2 ENSEMBL cdna:known chromosome:CEL140:III:6448267:6450642:-1 gene:T26A5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6448265-6450666(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26A5.6
Entrez Gene 175917 Entrez gene
SwissProt Q22794 EMBL-EBI
WormBase CE29822 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.5668.1.S1_AT similar to CG11178-PB, isoform B cfa
CANINE_2:CFAAFFX.5668.1.S1_S_AT similar to CG11178-PB, isoform B cfa
CANINE_2:CFAAFFX.5670.1.S1_AT similar to CG11178-PB, isoform B cfa
CANINE_2:CFAAFFX.5672.1.S1_S_AT similar to CG11178-PB, isoform B cfa
DROSOPHILA_2:1627664_A_AT dm
DROSGENOME1:153940_AT dm
CHICKEN:GGA.4333.1.S1_AT similar to CG11178-PB gga
CHICKEN:GGA.4333.1.S1_S_AT similar to CG11178-PB gga
CHICKEN:GGAAFFX.23815.1.S1_AT similar to CG11178-PB gga
CHICKEN:GGAAFFX.23815.2.S1_S_AT similar to CG11178-PB gga
HUGENEFL:D87682_AT KIAA0241 protein hs
U133_X3P:HS2.150275.1.S1_3P_AT KIAA0241 protein hs
U133_X3P:HS.150275.0.S3_3P_AT KIAA0241 protein hs
U133_X3P:HS.150275.0.S2_3P_AT KIAA0241 protein hs
U133_X3P:HS.150275.0.S1_3P_AT KIAA0241 protein hs
HG-U133_PLUS_2:1555055_AT KIAA0241 protein hs
HG-U133A_2:212471_AT KIAA0241 protein hs
HG-U133_PLUS_2:212471_AT KIAA0241 protein hs
HG-U133A:212471_AT KIAA0241 protein hs
HG-U133A_2:212474_AT KIAA0241 protein hs
HG-U133_PLUS_2:212474_AT KIAA0241 protein hs
HG-U133A:212474_AT KIAA0241 protein hs
HG-U133A_2:212475_AT KIAA0241 protein hs
HG-U133_PLUS_2:212475_AT KIAA0241 protein hs
HG-U133A:212475_AT KIAA0241 protein hs
HG-U95AV2:39761_AT KIAA0241 protein hs
U133_X3P:HS2.378862.1.S1_3P_X_AT KIAA0241 protein hs
U133_X3P:HS2.378862.1.S1_3P_AT KIAA0241 protein hs
U133_X3P:1563452_3P_AT KIAA0241 protein hs
HG-U133_PLUS_2:1563452_AT KIAA0241 protein hs
HG-U133_PLUS_2:244318_AT KIAA0241 protein hs
HG-U133B:244318_AT KIAA0241 protein hs
HG-U133_PLUS_2:244355_AT KIAA0241 protein hs
HG-U133B:244355_AT KIAA0241 protein hs
HG-U95E:69058_AT KIAA0241 protein hs
HG-U95E:71320_AT KIAA0241 protein hs
HG-U95E:82011_AT KIAA0241 protein hs
HG-U95E:86516_AT KIAA0241 protein hs
HG-U95D:90908_AT KIAA0241 protein hs
U133_X3P:HS.134792.0.A1_3P_AT KIAA0241 protein hs
U133_X3P:HS.213893.0.A1_3P_AT KIAA0241 protein hs
MG-U74BV2:107367_AT RIKEN cDNA 5830411G16 gene mm
MG-U74BV2:114463_AT RIKEN cDNA 5830411G16 gene mm
MOE430A:1434659_AT RIKEN cDNA 5830411G16 gene mm
MOUSE430A_2:1434659_AT RIKEN cDNA 5830411G16 gene mm
MOUSE430_2:1434659_AT RIKEN cDNA 5830411G16 gene mm
MOE430B:1430144_AT RIKEN cDNA 5830411G16 gene mm
MOUSE430_2:1430144_AT RIKEN cDNA 5830411G16 gene mm
MOE430B:1433177_AT RIKEN cDNA 5830411G16 gene mm
MOUSE430_2:1433177_AT RIKEN cDNA 5830411G16 gene mm
MOE430B:1457023_AT MKIAA0241 protein mm
MOUSE430_2:1457023_AT MKIAA0241 protein mm
MU19KSUBC:TC41083_AT MKIAA0241 protein mm
Protein Similarities
Method ID Description E-Value
blast NP_498416 T26A5.6 [Caenorhabditis elegans] gb|AAC77509.3| Hypothetical protein T26A5.6 [Caenorhabditis elegans] 0.0
blast CAE72498 Hypothetical protein CBG19677 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:182932_AT
tcgaagacgacggttctcttgtccataatcacattgaatttgtcaacgacacagcattgg
aacgagtagtttctctaactactgcagatcttcgattcgctgattttattctcaaaaaag
tcgaagaacaggttaaatcctcaaatgctgaattcgatggatcagatgaatggattcgtt
tacaaatgaaaaactatcttcttggcctcgttgccacgtcacgttccgatctacaagcag
cgatacctcattttggaatcgcttttgtaaacgaatggcggagaactaaaaatcacaaaa
tttgggttgcaaacaaacatgaagatttaacatctgttgcgccagggcacatgttctcgg
aacaaatgggagtctatgacgtgtatcttcgttttgaacatgccgtaaatggagttgaag
gagcttcaaaagttattggaactgtaaatactgccggaaagaatttaggaaataccattg
gagaaaccggtagtcgagtcaaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAAGACGACGGTTCTCTTGTCCA 73 599 995 Antisense
GGTTCTCTTGTCCATAATCACATTG 332 507 1006 Antisense
CTAACTACTGCAGATCTTCGATTCG 430 209 1069 Antisense
TCTTCGATTCGCTGATTTTATTCTC 523 617 1083 Antisense
TGAAAAACTATCTTCTTGGCCTCGT 518 569 1181 Antisense
TCACGTTCCGATCTACAAGCAGCGA 346 627 1213 Antisense
CAAGCAGCGATACCTCATTTTGGAA 322 185 1228 Antisense
AACATCTGTTGCGCCAGGGCACATG 617 137 1323 Antisense
GGGAGTCTATGACGTGTATCTTCGT 31 497 1362 Antisense
GTATCTTCGTTTTGAACATGCCGTA 430 453 1377 Antisense
GAGAAACCGGTAGTCGAGTCAAAGC 629 381 1475 Antisense
Sequence Source Affymetrix Proprietary Database