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[182931_at]

Description C49A9.6 /REP_DB=WormBase Gene ID /WP=CE16936 /TR=O44150 /GB=AAK29786.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 12      4grp_high_8_8 > 28      6grp_highest_nonorm > 80      6grp_total > 33      4grp_total > 36      6grp_highest_sub > De      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 156.4
(-0.2)
P 		236.1
(3)
P 		88.6
(-3)
A 		151.7
(-0.4)
A 		148
B 183.7
(1.3)
P 		207.8
(3)
A 		121.7
(-3)
A 		183
(1.3)
P 		86
C 144.9
(-0.9)
P 		195.2
(3)
P 		118.7
(-3)
P 		162.7
(0.5)
P 		77
avr 161.7
(0) 		213
(3) 		109.7
(-3) 		165.8
(0.3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 280
1 2 3 4 5 6 range
A 376.7
(3)
P 		197.3
(-0.9)
P 		244.6
(0.2)
P 		148.7
(-1.9)
P 		142.3
(-2)
P 		97.2
(-3)
P 		280
B 226.3
(-0.1)
P 		257.3
(0.7)
P 		344
(3)
P 		133.8
(-2.5)
P 		119.4
(-2.9)
P 		114.8
(-3)
P 		229
C 258.6
(2.4)
P 		267.2
(2.8)
P 		270.6
(3)
P 		185.2
(-1.2)
P 		149.2
(-3)
P 		153.7
(-2.8)
P 		121
avr 287.2
(3) 		240.6
(1.3) 		286.4
(3) 		155.9
(-1.8) 		137
(-2.5) 		121.9
(-3) 		165
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 57
(3)
P 		51.3
(2)
P 		23.2
(-2.8)
A 		22.2
(-3)
A 		35
B 58.6
(3)
P 		51.3
(1.6)
A 		28.2
(-3)
A 		39
(-0.9)
P 		30
C 48
(1.3)
P 		56.1
(3)
P 		41.4
(-0.1)
P 		27.4
(-3)
P 		29
avr 54.5
(3) 		52.9
(2.6) 		30.9
(-2.7) 		29.5
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 69.4
(2.9)
P 		70.2
(3)
P 		53.3
(0.8)
P 		37.7
(-1.2)
P 		42.9
(-0.5)
P 		23.7
(-3)
P 		47
B 78.7
(2.2)
P 		85.7
(3)
P 		83.5
(2.7)
P 		35.4
(-3)
P 		48.5
(-1.4)
P 		42.8
(-2.1)
P 		50
C 95.9
(3)
P 		81.5
(1.5)
P 		68.9
(0.2)
P 		37.2
(-3)
P 		48.3
(-1.9)
P 		51.4
(-1.5)
P 		59
avr 81.3
(3) 		79.1
(2.7) 		68.6
(1.3) 		36.8
(-3) 		46.6
(-1.7) 		39.3
(-2.7) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182931_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10582
Sequence Type Exemplar sequence
Representative Public ID C49A9.6 NCBI
Target Description C49A9.6 /REP_DB=WormBase Gene ID /WP=CE16936 /TR=O44150 /GB=AAK29786.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068531(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068531 NCBI Caenorhabditis elegans C49A9.6 (C49A9.6) mRNA, complete cds. 11/11 None
SNAP00000001921 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6210984:6212880:1 11/11 None
GENEFINDER00000001933 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6210984:6212880:1 11/11 None
C49A9.6 ENSEMBL cdna:known chromosome:CEL140:IV:6210984:6213075:1 gene:C49A9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6210989-6212886(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49A9.6
Entrez Gene 177381 Entrez gene
SwissProt O44150 EMBL-EBI
WormBase CE16936 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29786 Hypothetical protein C49A9.6 [Caenorhabditis elegans] ref|NP_500932.1| C49A9.6 [Caenorhabditis elegans] 0.0
blast CAE61588 Hypothetical protein CBG05502 [Caenorhabditis briggsae] 4.0E-80
blast AAK29792 Hypothetical protein C49A9.9a [Caenorhabditis elegans] ref|NP_001023084.1| C49A9.9a [Caenorhabditis elegans] 8.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 1.5E-85
Sequence
Target Sequence 
>C. ELEGANS:182931_AT
gagaatcgccgcatcaattagatcaaactgtcggtagggggttttcgacagctttcgaaa
atggaggaaaaattattggaagaggatttcaatccgtcaagcaaaacccggatattatca
aacaaagagctgtagttttgagtagtgttgaaaaaccaattggaactcattactatttat
ggaatgtggactccaaaacagagagtctgtttgtctccaacaaacaccacttagaacagg
gtcacttttttgatgggaacttcaagaaaaatgctgatggaaccagatggacgtgccaaa
actacggacaacccgtcgagcaattggctgaagggggaatcaatcaacggggaaaaatat
tcttcactgtgaaaattgagaactttcaaccagcaagaggaaatcgaaagtacggcagcg
cttttaataaatattttggagaaattttagaaggagattctgaaaatacaaagttatcaa
ccgatcataacggaaaaatggtacatatcgaacgtcgtggaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAATCGCCGCATCAATTAGATCA 20 391 530 Antisense
TTAGATCAAACTGTCGGTAGGGGGT 710 23 547 Antisense
GATTTCAATCCGTCAAGCAAAACCC 368 425 614 Antisense
AAACCAATTGGAACTCATTACTATT 29 125 682 Antisense
ACAGAGAGTCTGTTTGTCTCCAACA 327 107 727 Antisense
GTCTCCAACAAACACCACTTAGAAC 345 469 742 Antisense
GAACAGGGTCACTTTTTTGATGGGA 55 351 763 Antisense
GATGGAACCAGATGGACGTGCCAAA 375 405 805 Antisense
GACAACCCGTCGAGCAATTGGCTGA 486 363 836 Antisense
GGAAATCGAAAGTACGGCAGCGCTT 546 525 928 Antisense
GGTACATATCGAACGTCGTGGAATC 269 503 1029 Antisense
Sequence Source Affymetrix Proprietary Database