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[182930_at]

Description W03D2.1 /REP_DB=WormBase Gene ID /WP=CE28501 /TR=O02123 /GB=AAC48255.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 46      6grp_cgc > 21      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2329
1 2 3 4 range
A 2355.1
(3)
P 		783.3
(-1.5)
P 		415.7
(-2.6)
A 		258.7
(-3)
A 		2096
B 2523.6
(3)
P 		592.7
(-2.1)
P 		277.8
(-2.9)
A 		229.5
(-3)
A 		2294
C 2283.6
(3)
P 		595.1
(-1.8)
P 		327.4
(-2.6)
P 		194.2
(-3)
A 		2089
avr 2387.4
(3) 		657
(-1.8) 		340.3
(-2.7) 		227.5
(-3) 		2160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1082
1 2 3 4 5 6 range
A 1231.4
(3)
P 		733.2
(0.1)
P 		489.1
(-1.4)
P 		504.1
(-1.3)
P 		450.8
(-1.6)
P 		209.7
(-3)
A 		1022
B 1243.8
(3)
P 		723.2
(0.1)
P 		681.8
(-0.1)
P 		318.6
(-2.1)
P 		386.1
(-1.8)
P 		162.2
(-3)
A 		1082
C 1147.8
(3)
P 		491.3
(-1.3)
P 		781.6
(0.6)
P 		548.8
(-0.9)
M 		490.1
(-1.3)
P 		225
(-3)
A 		923
avr 1207.7
(3) 		649.2
(-0.3) 		650.8
(-0.3) 		457.2
(-1.5) 		442.3
(-1.6) 		199
(-3) 		1009
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 825
1 2 3 4 range
A 857.5
(3)
P 		170
(-2)
P 		108.7
(-2.5)
A 		37.9
(-3)
A 		820
B 804.8
(3)
P 		146.4
(-2.2)
P 		64.4
(-2.9)
A 		48.9
(-3)
A 		756
C 755.9
(3)
P 		171.1
(-1.9)
P 		114.1
(-2.3)
P 		32.7
(-3)
A 		723
avr 806.1
(3) 		162.5
(-2) 		95.7
(-2.6) 		39.8
(-3) 		766

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 382
1 2 3 4 5 6 range
A 227
(2)
P 		260.8
(3)
P 		106.5
(-1.4)
P 		127.9
(-0.8)
P 		136
(-0.6)
P 		51.1
(-3)
A 		210
B 432.8
(3)
P 		240.7
(-0.1)
P 		165.6
(-1.3)
P 		84.4
(-2.6)
P 		156.9
(-1.4)
P 		60.5
(-3)
A 		372
C 425.5
(3)
P 		149.9
(-1.7)
P 		198.9
(-0.9)
P 		110.4
(-2.4)
M 		158.6
(-1.6)
P 		75.3
(-3)
A 		350
avr 361.8
(3) 		217.1
(0.1) 		157
(-1.1) 		107.6
(-2.1) 		150.5
(-1.2) 		62.3
(-3) 		300
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182930_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10694
Sequence Type Exemplar sequence
Representative Public ID W03D2.1 NCBI
Target Description W03D2.1 /REP_DB=WormBase Gene ID /WP=CE28501 /TR=O02123 /GB=AAC48255.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171311(11), NM_171312(11), NM_171903(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171311 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-75) (pqn-75) mRNA, complete cds. 11/11 None
NM_171312 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-75) (pqn-75) mRNA, complete cds. 11/11 None
NM_171903 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-75) (pqn-75) mRNA, complete cds. 11/11 None
SNAP00000027045 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4075721:4077602:1 11/11 None
GENEFINDER00000027052 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4075721:4077602:1 11/11 None
W03D2.1a ENSEMBL cdna:known chromosome:CEL140:IV:4072320:4077625:1 gene:W03D2.1 11/11 None
W03D2.1c ENSEMBL cdna:known chromosome:CEL140:IV:4075704:4077602:1 gene:W03D2.1 11/11 None
W03D2.1b ENSEMBL cdna:known chromosome:CEL140:IV:4075704:4077602:1 gene:W03D2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4075726-4077608(+) 84.81 100.0
Public Domain and Genome References
Ensembl W03D2.1
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741366.1 1 5-27
W03D2.1c 1 5-27
GENEFINDER00000027052 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:182930_AT
accacgtcaaaagcgtcaggctcctgaaagatcaccaccaactggatctcctccaactgg
aagcccacctacaggccgcccaccacgtggaggaccaggaaagtctagcgaagagtcgtc
ggaatcccgtgaaggaccacgtggaggaccacgcggaggaccacgcggtggaccaagaaa
atccagcgaagagtcatcagagtctcgtgaagaaccaagaggtccacgaagatctccacc
aaccggaagcccaccaacaggatctcctccaactggacgtccaccacgtggatctccacc
aactggatcccctccaaccggccttccatctcgccagaaacgtcaggctccagaagaccg
accaaccggatcgccaccaactggatcaccaccaacaggacgtccacatcgtggaggacc
aggaaaatctgagtcgtctgaatcccgtgaaggaccaagaggaccacgtagatcaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCACGTCAAAAGCGTCAGGCTCCT 101 85 1071 Antisense
CTCCTGAAAGATCACCACCAACTGG 156 233 1091 Antisense
AGCGAAGAGTCGTCGGAATCCCGTG 621 81 1177 Antisense
CAAGAGGTCCACGAAGATCTCCACC 302 185 1286 Antisense
ACGTGGATCTCCACCAACTGGATCC 614 95 1356 Antisense
ATCTCGCCAGAAACGTCAGGCTCCA 39 33 1398 Antisense
CCAGAAGACCGACCAACCGGATCGC 198 273 1420 Antisense
CCAACTGGATCACCACCAACAGGAC 22 277 1447 Antisense
ACCAACAGGACGTCCACATCGTGGA 21 85 1461 Antisense
CTGAGTCGTCTGAATCCCGTGAAGG 283 239 1499 Antisense
CCAAGAGGACCACGTAGATCACCAC 214 277 1525 Antisense
Sequence Source Affymetrix Proprietary Database