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[182929_s_at]

Description ZK154.6 /REP_DB=WormBase Gene ID /WP=CE28178 /TR=Q94315 /GB=AAB09096.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 15      4grp_high_8_8 > 13      6grp_highest_nonorm > 90      6grp_total > 27      4grp_total > 11      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 363
1 2 3 4 range
A 88
(-3)
P 		131.1
(-2.3)
P 		125.6
(-2.4)
P 		451.3
(3)
P 		363
B 167.3
(-1.5)
P 		176.2
(-1.3)
P 		111.2
(-3)
P 		336.8
(3)
P 		226
C 158.4
(-1.9)
P 		170.9
(-1.7)
P 		103.6
(-3)
P 		405.8
(3)
P 		302
avr 137.9
(-2.5) 		159.4
(-2) 		113.5
(-3) 		398
(3) 		285

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 281.5
(3)
P 		131.4
(-2.1)
P 		160.4
(-1.1)
P 		106.3
(-3)
P 		144.3
(-1.7)
P 		178.5
(-0.5)
P 		175
B 203.5
(3)
P 		174.2
(0.7)
P 		125.6
(-3)
P 		181.7
(1.3)
P 		163.3
(-0.1)
P 		193.4
(2.2)
P 		78
C 273.5
(3)
P 		233
(1.5)
P 		114.4
(-3)
P 		133.2
(-2.3)
P 		135.9
(-2.2)
P 		195.9
(0.1)
P 		159
avr 252.8
(3) 		179.5
(-0.7) 		133.5
(-3) 		140.4
(-2.7) 		147.8
(-2.3) 		189.3
(-0.2) 		119
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 32
(-2.4)
P 		28.5
(-3)
P 		32.8
(-2.3)
P 		66.1
(3)
P 		38
B 53.3
(0.6)
P 		43.5
(-0.7)
P 		25.8
(-3)
P 		71.8
(3)
P 		46
C 52.4
(0)
P 		49.1
(-0.6)
P 		36.1
(-3)
P 		68.4
(3)
P 		32
avr 45.9
(-0.7) 		40.4
(-1.6) 		31.6
(-3) 		68.8
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 51.9
(3)
P 		46.7
(1.7)
P 		34.9
(-1.1)
P 		27
(-3)
P 		43.6
(1)
P 		43.5
(1)
P 		25
B 70.8
(2.8)
P 		58
(1)
P 		30.5
(-3)
P 		48.1
(-0.5)
P 		66.3
(2.2)
P 		72.1
(3)
P 		42
C 101.4
(3)
P 		71.1
(0.6)
P 		29.1
(-2.8)
P 		26.8
(-3)
P 		44
(-1.6)
P 		65.6
(0.1)
P 		75
avr 74.7
(3) 		58.6
(0.8) 		31.5
(-3) 		34
(-2.7) 		51.3
(-0.3) 		60.4
(1) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182929_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16403
Sequence Type Exemplar sequence
Representative Public ID ZK154.6 NCBI
Target Description ZK154.6 /REP_DB=WormBase Gene ID /WP=CE28178 /TR=Q94315 /GB=AAB09096.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029817
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZK154.6b ENSEMBL cdna:known chromosome:CEL140:X:7790395:7792196:-1 gene:ZK154.6 None
NM_001029817 NCBI Caenorhabditis elegans ZK154.6b (ZK154.6) mRNA, complete cds. None
SNAP00000014395 ENSEMBL cdna:SNAP chromosome:CEL140:X:7790395:7790805:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029816 5/11 Cross Hyb Matching Probes None
ZK154.6a 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7790393-7792196(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK154.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAQ91891 Hypothetical protein ZK154.6b [Caenorhabditis elegans] ref|NP_001024988.1| ZK154.6b [Caenorhabditis elegans] 7.0E-53
blast AAQ91891 Hypothetical protein ZK154.6b [Caenorhabditis elegans] ref|NP_001024988.1| ZK154.6b [Caenorhabditis elegans] 6.0E-42
blast AAB09096 Hypothetical protein ZK154.6a [Caenorhabditis elegans] ref|NP_001024987.1| ZK154.6a [Caenorhabditis elegans] 3.0E-18
blast AAB09096 Hypothetical protein ZK154.6a [Caenorhabditis elegans] ref|NP_001024987.1| ZK154.6a [Caenorhabditis elegans] 4.0E-18
blast CAE70277 Hypothetical protein CBG16791 [Caenorhabditis briggsae] 3.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024988.1 2 25-44,54-88
ZK154.6b 2 25-44,54-88
SNAP00000014395 2 7-25,35-69
Sequence
Target Sequence 
>C. ELEGANS:182929_S_AT
tagttcattgcgttcacattggccggcttttcaaatcgatagattcaactggcgccctgc
ttccacaaatggctcttctcgtgaaaaacatagagtgacagagagccgtcatcttttttt
cttcttcttcgttcatttcttgaacttaagaccaaacgttttagatcttgtcatgtcagc
tgaggatccggcaatatgggaatcaattttggcacttgatatatgggcaattattgtatg
ggtgtacgatcatcttccatttgagatcaaatcatacatctggatggtgattctcactct
tctcttcgttgtttttctgacaacctgctgcggcgtgctctgcttctttgctccatgctg
ttgctgtgccatcatgtacaaaggataccgagctcgccgagctggtagaagaccgcgcaa
cgaaactgacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGTTCATTGCGTTCACATTGGCCG 264 653 156 Antisense
ACATTGGCCGGCTTTTCAAATCGAT 116 103 171 Antisense
AATCGATAGATTCAACTGGCGCCCT 144 167 189 Antisense
GACAGAGAGCCGTCATCTTTTTTTC 467 365 252 Antisense
TGTCATGTCAGCTGAGGATCCGGCA 521 555 324 Antisense
TGGGTGTACGATCATCTTCCATTTG 311 553 394 Antisense
TCTTCTCTTCGTTGTTTTTCTGACA 357 617 453 Antisense
TCCATGCTGTTGCTGTGCCATCATG 675 589 507 Antisense
GTACAAAGGATACCGAGCTCGCCGA 456 461 531 Antisense
GCTCGCCGAGCTGGTAGAAGACCGC 215 299 547 Antisense
GAAGACCGCGCAACGAAACTGACAA 447 339 563 Antisense
Sequence Source Affymetrix Proprietary Database