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[182928_s_at]

Description K06B9.3 /REP_DB=WormBase Gene ID /WP=CE07341 /TR=Q21259 /GB=AAA93448.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 98      4grp_high_8_8 > 47      6grp_total > 96      4grp_total > 48      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 99.1
(-3)
P 		110.3
(-2.2)
P 		179.9
(3)
P 		105.2
(-2.5)
A 		81
B 122.4
(-2.1)
P 		133.7
(-1.3)
P 		198.7
(3)
P 		108.9
(-3)
P 		90
C 75.1
(-3)
P 		235
(3)
P 		202
(1.8)
P 		145.7
(-0.4)
P 		160
avr 98.9
(-3) 		159.7
(0.9) 		193.5
(3) 		119.9
(-1.7) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 376
1 2 3 4 5 6 range
A 76.3
(-3)
A 		164.1
(-0.7)
P 		179
(-0.3)
P 		303.1
(3)
P 		162.7
(-0.7)
P 		244.4
(1.4)
P 		227
B 96.6
(-3)
P 		143.6
(-2.2)
P 		98.5
(-3)
P 		140.6
(-2.3)
P 		289.3
(0.2)
P 		452.7
(3)
P 		356
C 148.2
(-2.6)
P 		131.5
(-3)
P 		185.9
(-1.6)
P 		218.5
(-0.8)
P 		373.2
(3)
P 		273.3
(0.5)
P 		242
avr 107
(-3) 		146.4
(-1.9) 		154.5
(-1.7) 		220.7
(0.2) 		275.1
(1.7) 		323.5
(3) 		217
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 36.1
(0.9)
P 		23.9
(-1.4)
P 		47
(3)
P 		15.4
(-3)
A 		32
B 39
(1.2)
P 		33
(-0.4)
P 		46
(3)
P 		23.2
(-3)
P 		23
C 24.9
(-3)
P 		67.6
(2.6)
P 		70.4
(3)
P 		24.6
(-3)
P 		46
avr 33.3
(-0.8) 		41.5
(0.7) 		54.5
(3) 		21.1
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 14.1
(-3)
A 		58.4
(1.2)
P 		39
(-0.6)
P 		76.9
(3)
P 		49.1
(0.3)
P 		59.5
(1.3)
P 		63
B 33.6
(-2.6)
P 		47.8
(-2)
P 		23.9
(-3)
P 		37.3
(-2.4)
P 		117.5
(0.9)
P 		168.8
(3)
P 		145
C 54.9
(-1.9)
P 		40.1
(-3)
P 		47.3
(-2.5)
P 		43.9
(-2.7)
P 		120.8
(3)
P 		91.5
(0.8)
P 		81
avr 34.2
(-3) 		48.8
(-1.8) 		36.7
(-2.8) 		52.7
(-1.5) 		95.8
(2.1) 		106.6
(3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182928_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10558
Sequence Type Exemplar sequence
Representative Public ID K06B9.3 NCBI
Target Description K06B9.3 /REP_DB=WormBase Gene ID /WP=CE07341 /TR=Q21259 /GB=AAA93448.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068108(11), NM_065376(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068108 NCBI Caenorhabditis elegans K06B9.3 (K06B9.3) mRNA, complete cds. 11/11 None
NM_065376 NCBI Caenorhabditis elegans C36A4.4 (C36A4.4) mRNA, complete cds. 11/11 A 
SNAP00000028394 ENSEMBL cdna:SNAP chromosome:CEL140:III:3841469:3843587:-1 11/11 None
GENEFINDER00000028409 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3841469:3843587:-1 11/11 None
SNAP00000011531 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4188999:4189322:1 10/11 None
C36A4.4.1 ENSEMBL cdna:known chromosome:CEL140:III:3841239:3843593:-1 gene:C36A4.4 11/11 None
C36A4.4.2 ENSEMBL cdna:known chromosome:CEL140:III:3841239:3843591:-1 gene:C36A4.4 11/11 None
K06B9.3 ENSEMBL cdna:known chromosome:CEL140:IV:4188200:4189322:1 gene:K06B9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4188205-4189328(+) 100.0 100.0
chrIII:3842949-3844052(-) 92.88 92.88
Public Domain and Genome References
Gene Title

Ensembl C36A4.4
K06B9.3
Entrez Gene 175497 Entrez gene
187061 Entrez gene
SwissProt Q18493 EMBL-EBI
Q21259 EMBL-EBI
WormBase CE27831 Wormbase
CE07341 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16779 nucleotidyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91270 Hypothetical protein C36A4.4 [Caenorhabditis elegans] ref|NP_497777.1| C36A4.4 [Caenorhabditis elegans] sp|Q18493|UAP1_CAEEL Probable UDP-N-acetylglucosamine pyrophosphorylase 0.0
blast T19764 hypothetical protein C36A4.4 - Caenorhabditis elegans 0.0
blast CAE58357 Hypothetical protein CBG01478 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002618 EMBL-EBI UTP--glucose-1-phosphate uridylyltransferase 1.2E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500509.1 1 10-32
K06B9.3 1 10-32
Sequence
Target Sequence 
>C. ELEGANS:182928_S_AT
gggaatggatgctattggacgtggagaagtatgtgcaattgtgctcgccggtggacaagc
tacacgtcttgattctcttttgggaattcaagctgccaaaattgcacttcttcaggctct
cgctggagaacgggagcatcagaatccgggaaaaattcactgggcagttatgacgtcacc
tggaacagaggaggctactcgtgagcatgtgaagaaactggcggctcatcatggattcga
tttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAATGGATGCTATTGGACGTGGA 679 493 132 Antisense
AGAAGTATGTGCAATTGTGCTCGCC 418 75 156 Antisense
TTCTCTTTTGGGAATTCAAGCTGCC 127 689 204 Antisense
CAAAATTGCACTTCTTCAGGCTCTC 100 191 228 Antisense
TCAGGCTCTCGCTGGAGAACGGGAG 601 591 243 Antisense
GAACGGGAGCATCAGAATCCGGGAA 321 347 259 Antisense
ATCCGGGAAAAATTCACTGGGCAGT 667 31 275 Antisense
GGCAGTTATGACGTCACCTGGAACA 276 537 294 Antisense
GAGGAGGCTACTCGTGAGCATGTGA 160 403 319 Antisense
GAAGAAACTGGCGGCTCATCATGGA 663 339 342 Antisense
GGCGGCTCATCATGGATTCGATTTC 392 541 351 Antisense
Sequence Source Affymetrix Proprietary Database