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[182927_at]

Description K01D12.5 /REP_DB=WormBase Gene ID /WP=CE06044 /TR=Q21095 /GB=CAA99872.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 90      6grp_total > 93      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 807
1 2 3 4 range
A 66.4
(-3)
A 		862.3
(3)
P 		623.5
(1.2)
P 		111.7
(-2.7)
P 		796
B 63.7
(-3)
A 		865.6
(3)
P 		682.8
(1.6)
P 		135.4
(-2.5)
A 		802
C 58.7
(-3)
A 		774.3
(3)
P 		580.4
(1.4)
P 		110.1
(-2.6)
A 		716
avr 62.9
(-3) 		834.1
(3) 		628.9
(1.4) 		119.1
(-2.6) 		771

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 439
1 2 3 4 5 6 range
A 158.6
(-3)
A 		403.9
(1.4)
P 		222.9
(-1.8)
P 		269
(-1)
P 		491.7
(3)
P 		336.2
(0.2)
P 		333
B 153.7
(-3)
P 		417
(1.6)
P 		288.9
(-0.6)
P 		381.5
(1)
P 		498.6
(3)
P 		315.1
(-0.2)
P 		345
C 182.6
(-3)
P 		389.3
(0)
P 		232.8
(-2.3)
P 		332.3
(-0.8)
P 		592.4
(3)
P 		259.5
(-1.9)
P 		410
avr 165
(-3) 		403.4
(0.9) 		248.2
(-1.6) 		327.6
(-0.3) 		527.6
(3) 		303.6
(-0.7) 		363
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 24.2
(-2.7)
A 		187.2
(3)
P 		163
(2.1)
P 		16.4
(-3)
P 		171
B 20.3
(-3)
A 		213.8
(3)
P 		158.2
(1.3)
P 		28.9
(-2.7)
A 		194
C 19.4
(-3)
A 		222.6
(3)
P 		202.3
(2.4)
P 		18.6
(-3)
A 		204
avr 21.3
(-3) 		207.9
(3) 		174.5
(1.9) 		21.3
(-3) 		187

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 29.2
(-3)
A 		143.6
(2.8)
P 		48.5
(-2)
P 		68.2
(-1)
P 		148.4
(3)
P 		81.9
(-0.3)
P 		119
B 53.5
(-3)
P 		138.8
(0.4)
P 		70.2
(-2.3)
P 		101.1
(-1.1)
P 		202.6
(3)
P 		117.5
(-0.4)
P 		149
C 67.7
(-2.6)
P 		118.8
(-0.3)
P 		59.3
(-3)
P 		66.8
(-2.7)
P 		191.7
(3)
P 		86.9
(-1.7)
P 		132
avr 50.1
(-3) 		133.7
(0.8) 		59.3
(-2.6) 		78.7
(-1.7) 		180.9
(3) 		95.4
(-0.9) 		131
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182927_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12903
Sequence Type Exemplar sequence
Representative Public ID K01D12.5 NCBI
Target Description K01D12.5 /REP_DB=WormBase Gene ID /WP=CE06044 /TR=Q21095 /GB=CAA99872.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073703(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073703 NCBI Caenorhabditis elegans K01D12.5 (K01D12.5) mRNA, complete cds. 11/11 None
SNAP00000007092 ENSEMBL cdna:SNAP chromosome:CEL140:V:12400438:12401295:1 11/11 None
GENEFINDER00000007113 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12400438:12401295:1 11/11 None
K01D12.5 ENSEMBL cdna:known chromosome:CEL140:V:12400438:12401295:1 gene:K01D12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12400437-12401295(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K01D12.5
Entrez Gene 186845 Entrez gene
SwissProt Q21095 EMBL-EBI
WormBase CE34198 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99872 Hypothetical protein K01D12.5 [Caenorhabditis elegans] ref|NP_506104.2| K01D12.5 [Caenorhabditis elegans] 8.0E-98
blast CAA99872 Hypothetical protein K01D12.5 [Caenorhabditis elegans] ref|NP_506104.2| K01D12.5 [Caenorhabditis elegans] 9.0E-95
blast CAE75472 Hypothetical protein CBG23474 [Caenorhabditis briggsae] 4.0E-66
blast CAE75472 Hypothetical protein CBG23474 [Caenorhabditis briggsae] 1.0E-55
Sequence
Target Sequence 
>C. ELEGANS:182927_AT
atatccacagtatcttccaactcatactggttattccaacattcaaactgtaggccaacc
atatcaaatgtacgggtcagcccctggctcaaatgtagtgtctggtggaaattcggaaag
ttacggatacaatcaacaagctcccgttccaacagttgcaccagctccagttcatttttc
tgaacgccaacgttcgtattctgctgcaccaactcctccatctccattttctgaaacccg
tgagcgcgaaaacaacaatgtccgagctcctggacatcacgccccagctcaacaaggaca
tagatcaccatctccaccaccttctccattcatgatcaacccaaaaccagttctctctta
tggagcagctaatccattccttgcaaatttgcccccagctcaaggtgtatatggtgctcc
aatcgattcttctcacagaggtgaagcaattagagcattttacgagctcaatcctcaagt
tacaggttatgatggattttctttgtcagcacctgcacctccatcgggttcgtcagcctc
tgtcgatgacacctgggaagcactggaagcatctctggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCCACAGTATCTTCCAACTCAT 417 21 258 Antisense
ATCAAATGTACGGGTCAGCCCCTGG 81 27 320 Antisense
AGCCCCTGGCTCAAATGTAGTGTCT 571 79 336 Antisense
GAACGCCAACGTTCGTATTCTGCTG 342 345 439 Antisense
CCATCTCCATTTTCTGAAACCCGTG 704 269 475 Antisense
AAAACAACAATGTCCGAGCTCCTGG 339 125 506 Antisense
CTTCTCCATTCATGATCAACCCAAA 250 221 578 Antisense
TCAACCCAAAACCAGTTCTCTCTTA 460 631 593 Antisense
GAGCAGCTAATCCATTCCTTGCAAA 278 387 620 Antisense
GCTCCAATCGATTCTTCTCACAGAG 15 299 673 Antisense
GGAAGCACTGGAAGCATCTCTGGAC 382 531 813 Antisense
Sequence Source Affymetrix Proprietary Database