[Home] | [Total List]

[182926_at]

Description C06E7.2 /REP_DB=WormBase Gene ID /WP=CE03958 /TR=Q17731 /GB=AAA82278.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 55      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 91      6grp_total > 56      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 306
1 2 3 4 range
A 287.7
(0.4)
P
213.5
(-1.5)
P
158.8
(-3)
P
384.9
(3)
P
226
B 304
(1.6)
P
262.4
(0.1)
P
178.3
(-3)
P
343.1
(3)
P
165
C 298.9
(-0.8)
P
248.3
(-2)
P
206.2
(-3)
P
464.3
(3)
P
258
avr 296.9
(0.2)
241.4
(-1.3)
181.1
(-3)
397.4
(3)
216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 187.8
(-3)
P
236
(0.6)
P
268.7
(3)
P
223
(-0.4)
P
216.1
(-0.9)
P
190.1
(-2.8)
P
81
B 282.3
(2.9)
P
192.8
(-1.3)
P
180.9
(-1.9)
P
194
(-1.3)
P
157.2
(-3)
P
284.1
(3)
P
127
C 187.3
(-0.6)
P
263.9
(1.8)
P
200
(-0.2)
P
207.3
(0.1)
P
109.2
(-3)
P
301.5
(3)
P
192
avr 219.1
(0.6)
230.9
(1.3)
216.5
(0.4)
208.1
(-0.1)
160.8
(-3)
258.6
(3)
98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 104.8
(3)
P
46.3
(-2.5)
P
41.5
(-3)
P
56.3
(-1.6)
P
63
B 96.9
(3)
P
64.8
(-0.5)
P
41.3
(-3)
P
73.1
(0.4)
P
56
C 98.9
(3)
P
71.4
(-3)
P
71.9
(-2.9)
P
78.3
(-1.5)
P
28
avr 100.2
(3)
60.8
(-1.9)
51.6
(-3)
69.2
(-0.8)
49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 34.6
(-3)
P
83.9
(3)
P
58.5
(-0.1)
P
56.6
(-0.3)
P
65.2
(0.7)
P
46.3
(-1.6)
P
49
B 98.2
(2.3)
P
64.2
(-1)
P
43.9
(-3)
P
51.4
(-2.3)
P
63.9
(-1.1)
P
105.9
(3)
P
62
C 69.4
(0.1)
P
80.5
(1.1)
P
50.9
(-1.6)
P
41.7
(-2.4)
P
35.3
(-3)
P
100.9
(3)
P
66
avr 67.4
(0)
76.2
(1.6)
51.1
(-2.8)
49.9
(-3)
54.8
(-2.1)
84.4
(3)
35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182926_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10892
Sequence Type Exemplar sequence
Representative Public ID C06E7.2 NCBI
Target Description C06E7.2 /REP_DB=WormBase Gene ID /WP=CE03958 /TR=Q17731 /GB=AAA82278.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068469(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_068469 NCBI Caenorhabditis elegans C06E7.2 (C06E7.2) mRNA, complete cds. 11/11 None
SNAP00000039815 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5839530:5843911:1 11/11 None
GENEFINDER00000039825 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5839086:5843911:1 11/11 None
C06E7.2.1 ENSEMBL cdna:known chromosome:CEL140:IV:5839384:5843980:1 gene:C06E7.2 11/11 None
C06E7.2.2 ENSEMBL cdna:known chromosome:CEL140:IV:5839463:5843980:1 gene:C06E7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5838453-5843917(+) 98.16 100.0
Public Domain and Genome References
Gene Title
Ensembl C06E7.2
Entrez Gene 177353 Entrez gene
SwissProt Q17731 EMBL-EBI
WormBase CE33516 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82278 Hypothetical protein C06E7.2 [Caenorhabditis elegans] ref|NP_500870.2| C06E7.2 [Caenorhabditis elegans] 0.0
blast CAE72643 Hypothetical protein CBG19845 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence
>C. ELEGANS:182926_AT
gcaacctcattctcgtttgatgttggaatcattcgagaatcaactgtcgaaaaattgaaa
gtggatccaagacctccatttggcaccaaagtgtcctctcgtcccagctcaaaagcttca
aaactcaatgagcaattcaatcagaagcacaaagcgtctacaccatctccaactaaaaaa
ccatccgaatcttccgtaactccatcttctgcaacatcattcaaaccaaaagaagcatat
tctccatcgaaatcctttttcagttatgaaatgggcggagtcggaacaacatcagcttca
gaaataaatgaaaaaatattaatttcaaatgaaattccagttgatgaaatatcaaaagaa
gaagaagaaaaagcagaaaaagaattaaatgaaataataaaagaattaaaatcagatgaa
gaagctgtcgatggagaga


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
GCAACCTCATTCTCGTTTGATGTTG 167 321 1069 Antisense
GGAATCATTCGAGAATCAACTGTCG 163 533 1093 Antisense
GTGGATCCAAGACCTCCATTTGGCA 331 489 1129 Antisense
CCATTTGGCACCAAAGTGTCCTCTC 225 269 1144 Antisense
TCTCGTCCCAGCTCAAAAGCTTCAA 4 611 1165 Antisense
AGAAGCACAAAGCGTCTACACCATC 134 75 1211 Antisense
TCCAACTAAAAAACCATCCGAATCT 286 585 1236 Antisense
GAAGCATATTCTCCATCGAAATCCT 269 341 1300 Antisense
TCTCCATCGAAATCCTTTTTCAGTT 95 611 1309 Antisense
GGCGGAGTCGGAACAACATCAGCTT 502 541 1342 Antisense
GATGAAGAAGCTGTCGATGGAGAGA 643 411 1483 Antisense
Sequence Source Affymetrix Proprietary Database