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[182925_at]

Description C49A9.1 /REP_DB=WormBase Gene ID /WP=CE16931 /TR=O44155 /GB=AAK29788.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 21      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 15.4
(-3)
A 		58.8
(-0.4)
A 		58.4
(-0.5)
A 		117.3
(3)
A 		102
B 60.1
(3)
A 		57.5
(2.4)
A 		32.2
(-3)
A 		37.5
(-1.9)
A 		28
C 110.7
(3)
A 		52.9
(-1.5)
A 		33
(-3)
A 		72.4
(0)
A 		78
avr 62.1
(0.6) 		56.4
(-0.4) 		41.2
(-3) 		75.7
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 41.6
(-1.5)
A 		58.5
(-0.5)
A 		112.6
(3)
A 		33.3
(-2.1)
A 		62.8
(-0.2)
A 		18.7
(-3)
A 		94
B 8.5
(-3)
A 		61.3
(0.9)
A 		89.3
(3)
A 		75.6
(2)
A 		45.2
(-0.3)
A 		30.6
(-1.4)
A 		81
C 78.4
(3)
A 		36.4
(-0.7)
A 		48.8
(0.4)
A 		67.1
(2)
A 		38.9
(-0.5)
A 		10.2
(-3)
A 		68
avr 42.8
(-0.8) 		52.1
(0) 		83.6
(3) 		58.7
(0.7) 		49
(-0.3) 		19.8
(-3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 5.6
(-3)
A 		12.8
(0.7)
A 		15.3
(2)
A 		17.2
(3)
A 		12
B 19.2
(3)
A 		14.2
(0.4)
A 		7.5
(-3)
A 		8
(-2.7)
A 		12
C 36.7
(3)
A 		15.2
(-2.1)
A 		11.5
(-3)
A 		12.2
(-2.8)
A 		25
avr 20.5
(3) 		14.1
(-1.2) 		11.4
(-3) 		12.5
(-2.3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 7.7
(-2)
A 		20.8
(1.9)
A 		24.5
(3)
A 		8.4
(-1.8)
A 		19
(1.4)
A 		4.5
(-3)
A 		20
B 3
(-3)
A 		20.4
(2.6)
A 		21.7
(3)
A 		20
(2.5)
A 		18.4
(1.9)
A 		11.4
(-0.3)
A 		19
C 29.1
(3)
A 		11.1
(-1.2)
A 		12.4
(-0.9)
A 		13.5
(-0.6)
A 		12.6
(-0.9)
A 		3.4
(-3)
A 		26
avr 13.3
(0.2) 		17.4
(2) 		19.5
(3) 		14
(0.5) 		16.7
(1.7) 		6.4
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182925_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10545
Sequence Type Exemplar sequence
Representative Public ID C49A9.1 NCBI
Target Description C49A9.1 /REP_DB=WormBase Gene ID /WP=CE16931 /TR=O44155 /GB=AAK29788.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068537(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068537 NCBI Caenorhabditis elegans C49A9.1 (C49A9.1) mRNA, complete cds. 11/11 None
C49A9.1 ENSEMBL cdna:known chromosome:CEL140:IV:6228187:6229977:1 gene:C49A9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041822 8/11 Cross Hyb Matching Probes None
GENEFINDER00000041836 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6228192-6229983(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49A9.1
Entrez Gene 183592 Entrez gene
SwissProt O44155 EMBL-EBI
WormBase CE16931 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29788 Hypothetical protein C49A9.1 [Caenorhabditis elegans] ref|NP_500938.1| C49A9.1 [Caenorhabditis elegans] 0.0
blast AAK29793 Hypothetical protein C49A9.4 [Caenorhabditis elegans] ref|NP_500935.2| C49A9.4 [Caenorhabditis elegans] 1.0E-58
blast CAE61582 Hypothetical protein CBG05496 [Caenorhabditis briggsae] 7.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 1.7E-84
Sequence
Target Sequence 
>C. ELEGANS:182925_AT
accccagttttcttgatgatctctcagatgaacccctggaaatcaagaaaacgatttcta
ataattctctagatggtttttccatggaacagcttatccaacaacttccgactctggaac
ttggtgaagccgaaaatagcgtacgcgttccacaaaacctttctgctccacggctgatga
aagcgtttgtgtattccgttcatcaatatccacatactaaatttcacttcctgtggattt
gtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCCCAGTTTTCTTGATGATCTCTC 110 91 563 Antisense
TGATCTCTCAGATGAACCCCTGGAA 506 565 579 Antisense
ATAATTCTCTAGATGGTTTTTCCAT 581 25 623 Antisense
GAACAGCTTATCCAACAACTTCCGA 67 353 649 Antisense
ACAACTTCCGACTCTGGAACTTGGT 432 107 663 Antisense
GAAGCCGAAAATAGCGTACGCGTTC 95 345 688 Antisense
TTCTGCTCCACGGCTGATGAAAGCG 186 691 723 Antisense
AAAGCGTTTGTGTATTCCGTTCATC 636 123 742 Antisense
TTCCGTTCATCAATATCCACATACT 201 699 756 Antisense
TCCACATACTAAATTTCACTTCCTG 213 589 771 Antisense
AAATTTCACTTCCTGTGGATTTGTG 153 115 781 Antisense
Sequence Source Affymetrix Proprietary Database