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[182923_at]

Description F56D2.3 /REP_DB=WormBase Gene ID /WP=CE11230 /TR=Q20873 /GB=AAB52682.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      6grp_highest_nonorm > 52      6grp_total > 82      4grp_total > 49      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1397
1 2 3 4 range
A 47.7
(-3)
M 		1426.7
(3)
P 		1199.6
(2)
P 		85.9
(-2.8)
A 		1379
B 29.7
(-3)
A 		1262.2
(3)
P 		1215.9
(2.8)
P 		44.2
(-2.9)
A 		1233
C 41.5
(-3)
P 		1412.6
(3)
P 		1210.4
(2.1)
P 		34.5
(-3)
A 		1378
avr 39.6
(-3) 		1367.2
(3) 		1208.6
(2.3) 		54.9
(-2.9) 		1328

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 966
1 2 3 4 5 6 range
A 490.5
(-2)
P 		1262.7
(3)
P 		446.7
(-2.3)
P 		882
(0.5)
P 		614.8
(-1.2)
P 		331.3
(-3)
P 		931
B 395.6
(-2.2)
P 		767.4
(3)
P 		446.4
(-1.5)
P 		685.5
(1.9)
P 		645.7
(1.3)
P 		339.5
(-3)
P 		428
C 518
(-1.2)
P 		831.9
(1.3)
P 		688
(0.1)
P 		718.1
(0.4)
P 		1043
(3)
P 		296.7
(-3)
P 		746
avr 468
(-1.6) 		954
(3) 		527
(-1.1) 		761.9
(1.2) 		767.8
(1.2) 		322.5
(-3) 		632
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 416
1 2 3 4 range
A 17.4
(-2.9)
M 		309.7
(2.9)
P 		313.6
(3)
P 		12.6
(-3)
A 		301
B 9.5
(-3)
A 		311.7
(3)
P 		281.7
(2.4)
P 		9.4
(-3)
A 		302
C 13.7
(-2.9)
P 		406.1
(2.8)
P 		421.8
(3)
P 		5.8
(-3)
A 		416
avr 13.5
(-2.9) 		342.5
(3) 		339
(2.9) 		9.3
(-3) 		333

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 368
1 2 3 4 5 6 range
A 90.4
(-2.8)
P 		449.1
(3)
P 		97.3
(-2.7)
P 		223.7
(-0.7)
P 		185.5
(-1.3)
P 		80.7
(-3)
P 		368
B 137.7
(-1.9)
P 		255.4
(2.7)
P 		108.4
(-3)
P 		181.6
(-0.1)
P 		262.3
(3)
P 		126.6
(-2.3)
P 		154
C 192
(-0.7)
P 		253.8
(0.9)
P 		175.1
(-1.1)
P 		144.4
(-1.9)
P 		337.5
(3)
P 		99.3
(-3)
P 		238
avr 140
(-2) 		319.4
(3) 		126.9
(-2.3) 		183.2
(-0.8) 		261.8
(1.4) 		102.2
(-3) 		217
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182923_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7512
Sequence Type Exemplar sequence
Representative Public ID F56D2.3 NCBI
Target Description F56D2.3 /REP_DB=WormBase Gene ID /WP=CE11230 /TR=Q20873 /GB=AAB52682.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065798(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065798 NCBI Caenorhabditis elegans F56D2.3 (F56D2.3) mRNA, complete cds. 11/11 None
SNAP00000013288 ENSEMBL cdna:SNAP chromosome:CEL140:III:5585015:5586738:1 11/11 None
GENEFINDER00000013295 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5585015:5586738:1 11/11 None
F56D2.3 ENSEMBL cdna:known chromosome:CEL140:III:5584640:5586931:1 gene:F56D2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5584638-5586737(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56D2.3
Entrez Gene 175769 Entrez gene
SwissProt Q20873 EMBL-EBI
WormBase CE11230 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52682 Hypothetical protein F56D2.3 [Caenorhabditis elegans] ref|NP_498199.1| F56D2.3 [Caenorhabditis elegans] 0.0
blast AAB52682 Hypothetical protein F56D2.3 [Caenorhabditis elegans] ref|NP_498199.1| F56D2.3 [Caenorhabditis elegans] 1.0E-154
blast CAE64303 Hypothetical protein CBG08979 [Caenorhabditis briggsae] 1.0E-110
Sequence
Target Sequence 
>C. ELEGANS:182923_AT
ggagaagccaacttcggtgagcccatggagaaaactgaccgcgagcgagctatggaacgg
gccaaaccgggattttggcgtcaaaaccaacgcgaaaccatggatcggatcaagaaaatt
attggagagcagagaatgaatatggagcagaagcaaatgcatattcgaagagttctagca
aatgagagtgatgagataaggtccaaattcgctgatattcacaaaagactgatcatgaaa
aacaacaagatgaccgtctcctctccagttccagagcttagcaaacaggcgaagaagctt
gagaaagaggccaagaaaattatggaaaacaagaaaatgagtgtagagaagaagcaggag
aaacttgacaaacttatgcttaaggctccagagaacgttaagaatgagctcaatgctatg
aacgattcgggatcaacacctgccccaattcaagctccattcccagctccaggacaaacc
gaggctcttaatcgggcaaacccatcaatggcttctcaagttgaagtaatgactcgtaat
gcaccaactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGAAGCCAACTTCGGTGAGCCCA 71 519 640 Antisense
GGAGAAAACTGACCGCGAGCGAGCT 206 519 666 Antisense
GCGAGCTATGGAACGGGCCAAACCG 634 289 684 Antisense
AAGGTCCAAATTCGCTGATATTCAC 118 161 837 Antisense
AACAACAAGATGACCGTCTCCTCTC 394 135 880 Antisense
TCCTCTCCAGTTCCAGAGCTTAGCA 447 593 898 Antisense
AACGATTCGGGATCAACACCTGCCC 189 143 1060 Antisense
CCAGCTCCAGGACAAACCGAGGCTC 257 271 1102 Antisense
CGAGGCTCTTAATCGGGCAAACCCA 197 245 1119 Antisense
GGCAAACCCATCAATGGCTTCTCAA 432 535 1134 Antisense
GTAATGACTCGTAATGCACCAACTC 643 461 1165 Antisense
Sequence Source Affymetrix Proprietary Database