[Home] | [Total List]

[182921_at]

Description C01G5.3 /REP_DB=WormBase Gene ID /WP=CE06749 /TR=Q17565 /GB=AAB37735.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 36      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 3.5
(-2.5)
A 		27.3
(3)
A 		4.7
(-2.2)
A 		1.3
(-3)
A 		26
B 2.4
(-3)
A 		2.7
(-2.8)
A 		2.7
(-2.8)
A 		11.4
(3)
A 		9
C 17.2
(3)
A 		1.8
(-2.7)
A 		1.1
(-3)
A 		1.3
(-2.9)
A 		16
avr 7.7
(0.8) 		10.6
(3) 		2.8
(-3) 		4.7
(-1.5) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 34.6
(3)
A 		2.7
(-3)
A 		4.6
(-2.6)
A 		8
(-2)
A 		28.8
(1.9)
A 		15.2
(-0.6)
A 		32
B 2.9
(-2.6)
A 		5.4
(-1.7)
A 		1.7
(-3)
A 		19.2
(3)
A 		18.2
(2.6)
A 		19.3
(3)
A 		18
C 2
(-3)
A 		2.3
(-2.9)
A 		1.7
(-3)
A 		39.7
(3)
A 		15.8
(-0.8)
A 		11.7
(-1.4)
A 		38
avr 13.2
(0.2) 		3.5
(-2.8) 		2.7
(-3) 		22.3
(3) 		20.9
(2.6) 		15.4
(0.9) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.3
(-1.8)
A 		5.9
(3)
A 		1.2
(-1.9)
A 		0.2
(-3)
A 		6
B 0.8
(-2.3)
A 		0.7
(-2.7)
A 		0.6
(-3)
A 		2.4
(3)
A 		2
C 5.7
(3)
A 		0.5
(-2.7)
A 		0.4
(-2.8)
A 		0.2
(-3)
A 		6
avr 2.6
(3) 		2.4
(2.4) 		0.7
(-3) 		0.9
(-2.4) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 6.4
(1.2)
A 		1
(-3)
A 		1
(-3)
A 		2
(-2.2)
A 		8.7
(3)
A 		3.7
(-0.9)
A 		8
B 1
(-2.5)
A 		1.8
(-1.8)
A 		0.4
(-3)
A 		5.1
(1)
A 		7.4
(3)
A 		7.2
(2.8)
A 		7
C 0.7
(-2.8)
A 		0.7
(-2.8)
A 		0.4
(-3)
A 		8
(3)
A 		5.1
(0.7)
A 		3.9
(-0.2)
A 		8
avr 2.7
(-1.1) 		1.2
(-2.4) 		0.6
(-3) 		5
(1.1) 		7.1
(3) 		4.9
(1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182921_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10541
Sequence Type Exemplar sequence
Representative Public ID C01G5.3 NCBI
Target Description C01G5.3 /REP_DB=WormBase Gene ID /WP=CE06749 /TR=Q17565 /GB=AAB37735.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068595(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068595 NCBI Caenorhabditis elegans C01G5.3 (C01G5.3) mRNA, complete cds. 11/11 None
C01G5.3 ENSEMBL cdna:known chromosome:CEL140:IV:6536219:6538984:1 gene:C01G5.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022683 3/11 Cross Hyb Matching Probes None
SNAP00000022684 3/11 Cross Hyb Matching Probes None
GENEFINDER00000022686 4/11 Cross Hyb Matching Probes None
GENEFINDER00000022690 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6536224-6538990(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01G5.3
Entrez Gene 182073 Entrez gene
SwissProt Q17565 EMBL-EBI
WormBase CE06749 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37735 Hypothetical protein C01G5.3 [Caenorhabditis elegans] ref|NP_500996.1| C01G5.3 [Caenorhabditis elegans] 0.0
blast AAF36054 Hypothetical protein Y75B7B.1 [Caenorhabditis elegans] ref|NP_503399.1| Y75B7B.1 [Caenorhabditis elegans] 1.0E-86
blast NP_498073 C45G9.8 [Caenorhabditis elegans] gb|AAA62551.1| Hypothetical protein C45G9.8 [Caenorhabditis elegans] sp|Q09280|YQI8_CAEEL Hypothetical protein C45G9.8 in chromosome III 3.0E-63
Sequence
Target Sequence 
>C. ELEGANS:182921_AT
attttacgcctgaacttgtcttctcaaatactataagatctcttatcaattcacaacgaa
tggacggggaaacgcgaaaagaaagtaaattggacgagaatcgaaagtctgacagactga
aaattgaggataagaagccggaggagtatgtctatttgaaagcaagcaaaaaaaaattgt
acacgatgagcatcagtgtcgacgttaaacccagattatttcaagaatcattattcaagt
tcccggaaattataatatcttcgattaagcttgagtccacaaagttcgttaaagatgaaa
aagttggaattattgaaagtccgacaccaaaagccgatccagctgaaaatacaccaactc
aagcggtggagccaattaatattgagaaggaggtgaacgaatcggaggtagtagtggaaa
agaaggagacggatgttgtcgttgagaataaaaacgatgaaatccaagatatatgcattc
cgttgaaaaaccttatgattttcagcactaaactgaaaattggaatgcatttctatgaat
cgcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTACGCCTGAACTTGTCTTCTC 189 15 863 Antisense
GAACTTGTCTTCTCAAATACTATAA 127 351 874 Antisense
AGATCTCTTATCAATTCACAACGAA 453 65 898 Antisense
AAGCCGGAGGAGTATGTCTATTTGA 539 149 997 Antisense
GATGAGCATCAGTGTCGACGTTAAA 485 411 1047 Antisense
TCGACGTTAAACCCAGATTATTTCA 195 589 1061 Antisense
GAATCATTATTCAAGTTCCCGGAAA 609 327 1087 Antisense
TCTTCGATTAAGCTTGAGTCCACAA 653 613 1120 Antisense
AAATCCAAGATATATGCATTCCGTT 392 117 1322 Antisense
AAACCTTATGATTTTCAGCACTAAA 650 125 1350 Antisense
GGAATGCATTTCTATGAATCGCAAT 345 531 1384 Antisense
Sequence Source Affymetrix Proprietary Database