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[182920_at]

Description Y37H2B.1 /REP_DB=WormBase Gene ID /WP=CE19088 /TR=Q9XXF5 /GB=CAA19498.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 01      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 20.6
(-2.3)
A 		13.4
(-2.7)
A 		8.2
(-3)
A 		107.9
(3)
P 		100
B 11.6
(-2.4)
A 		4.5
(-3)
A 		11.5
(-2.4)
A 		78.7
(3)
P 		74
C 3.4
(-3)
A 		5.7
(-2.7)
A 		27.8
(0.1)
A 		50.6
(3)
A 		47
avr 11.9
(-2.7) 		7.9
(-3) 		15.8
(-2.3) 		79.1
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 5.8
(-0.9)
A 		7.7
(3)
A 		4.8
(-3)
A 		6.9
(1.3)
A 		6.6
(0.7)
A 		7.5
(2.6)
A 		3
B 3.7
(-3)
A 		16.5
(0.5)
A 		25.5
(3)
A 		9.4
(-1.4)
A 		6
(-2.4)
A 		7.5
(-2)
A 		22
C 4.3
(-3)
A 		39
(3)
A 		5.8
(-2.7)
A 		33.6
(2.1)
A 		4.6
(-2.9)
A 		13.4
(-1.4)
A 		35
avr 4.6
(-3) 		21.1
(3) 		12
(-0.3) 		16.6
(1.4) 		5.7
(-2.6) 		9.5
(-1.2) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 7.5
(-0.6)
A 		2.9
(-2.6)
A 		2.1
(-3)
A 		15.8
(3)
P 		14
B 3.7
(-2)
A 		1.1
(-3)
A 		2.7
(-2.4)
A 		16.8
(3)
P 		16
C 1.1
(-3)
A 		1.6
(-2.7)
A 		9.7
(3)
A 		8.5
(2.2)
A 		9
avr 4.1
(-1.9) 		1.9
(-3) 		4.8
(-1.5) 		13.7
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.1
(-3)
A 		2.7
(3)
A 		1.1
(-3)
A 		1.8
(-0.4)
A 		2
(0.4)
A 		1.8
(-0.4)
A 		2
B 1.3
(-3)
A 		5.5
(2.1)
A 		6.2
(3)
A 		2.5
(-1.5)
A 		2.4
(-1.7)
A 		2.8
(-1.2)
A 		5
C 1.6
(-2.9)
A 		11.9
(3)
A 		1.5
(-3)
A 		6.8
(0.1)
A 		1.5
(-3)
A 		4.5
(-1.3)
A 		10
avr 1.3
(-3) 		6.7
(3) 		2.9
(-1.2) 		3.7
(-0.3) 		2
(-2.2) 		3
(-1.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182920_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14297
Sequence Type Exemplar sequence
Representative Public ID Y37H2B.1 NCBI
Target Description Y37H2B.1 /REP_DB=WormBase Gene ID /WP=CE19088 /TR=Q9XXF5 /GB=CAA19498.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075165(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075165 NCBI Caenorhabditis elegans Y37H2B.1 (Y37H2B.1) mRNA, complete cds. 11/11 None
SNAP00000019272 ENSEMBL cdna:SNAP chromosome:CEL140:V:18229608:18230856:-1 11/11 None
GENEFINDER00000019274 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18229608:18231854:-1 11/11 None
Y37H2B.1 ENSEMBL cdna:known chromosome:CEL140:V:18229608:18230751:-1 gene:Y37H2B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18229607-18230751(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37H2B.1
Entrez Gene 180191 Entrez gene
SwissProt Q9XXF5 EMBL-EBI
WormBase CE19088 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19498 Hypothetical protein Y37H2B.1 [Caenorhabditis elegans] ref|NP_507566.1| Y37H2B.1 [Caenorhabditis elegans] 1.0E-87
blast CAA19498 Hypothetical protein Y37H2B.1 [Caenorhabditis elegans] ref|NP_507566.1| Y37H2B.1 [Caenorhabditis elegans] 2.0E-87
blast CAA19498 Hypothetical protein Y37H2B.1 [Caenorhabditis elegans] ref|NP_507566.1| Y37H2B.1 [Caenorhabditis elegans] 6.0E-87
blast CAB04506 Hypothetical protein F57G4.1 [Caenorhabditis elegans] ref|NP_507457.1| F57G4.1 [Caenorhabditis elegans] 2.0E-14
blast CAB04506 Hypothetical protein F57G4.1 [Caenorhabditis elegans] ref|NP_507457.1| F57G4.1 [Caenorhabditis elegans] 5.0E-14
blast CAB04643 Hypothetical protein R10E8.1 [Caenorhabditis elegans] ref|NP_507568.2| R10E8.1 [Caenorhabditis elegans] 4.0E-13
blast CAB04643 Hypothetical protein R10E8.1 [Caenorhabditis elegans] ref|NP_507568.2| R10E8.1 [Caenorhabditis elegans] 9.0E-13
blast CAB04506 Hypothetical protein F57G4.1 [Caenorhabditis elegans] ref|NP_507457.1| F57G4.1 [Caenorhabditis elegans] 8.0E-12
Sequence
Target Sequence 
>C. ELEGANS:182920_AT
gaatgcgctgagctctgatgctctcaatgaacttaacctcaacataagatccacggatgt
gatgaatatctctcgtctgatcgagtcacctaagtggggaaaactcaagtttgttactat
tggaggttgtacggtttctgcggacgttacacgttttctccatctgaagaaatgcattat
tgcaaaggagaatatttcaaaggaggagctcattcttttgaaagtggcaatccttggagc
ttgtagtaagaaggattttgttatcaagtgtaactttatcaatgaagtaaccgaagaagc
cttgcatgcaatttttgaccgcaaccccgcagccaggactgaaggagacaacggagaagt
gaccacgcgttgggagtatcaaagaaaacggcacaatgttgaagtggagtaccgtcaact
tggtgatcgcgatgctcacgcatttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGCGCTGAGCTCTGATGCTCTC 274 331 15 Antisense
GATGCTCTCAATGAACTTAACCTCA 423 413 31 Antisense
ATCTCTCGTCTGATCGAGTCACCTA 436 33 82 Antisense
TGGAGGTTGTACGGTTTCTGCGGAC 399 549 135 Antisense
TGCGGACGTTACACGTTTTCTCCAT 639 557 153 Antisense
GAAAGTGGCAATCCTTGGAGCTTGT 530 359 234 Antisense
GCATGCAATTTTTGACCGCAACCCC 488 309 318 Antisense
ACCCCGCAGCCAGGACTGAAGGAGA 141 91 338 Antisense
GAAGTGACCACGCGTTGGGAGTATC 659 329 370 Antisense
GTACCGTCAACTTGGTGATCGCGAT 29 459 423 Antisense
TGATCGCGATGCTCACGCATTTCAA 316 565 438 Antisense
Sequence Source Affymetrix Proprietary Database