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[182918_at]

Description Y51A2A.6 /REP_DB=WormBase Gene ID /WP=CE20277 /TR=Q9XWP9 /GB=CAA21601.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 18      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 17.4
(-1.5)
A 		48.6
(1.9)
A 		2.9
(-3)
A 		59.4
(3)
A 		57
B 32.3
(2.6)
A 		14.6
(-3)
A 		33.7
(3)
A 		30.7
(2.1)
A 		19
C 10.6
(-3)
A 		39
(-1.2)
A 		24.6
(-2.1)
A 		105.9
(3)
M 		95
avr 20.1
(-3) 		34.1
(-1.1) 		20.4
(-3) 		65.3
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 52.8
(3)
A 		10.9
(-2.1)
A 		36.6
(1)
A 		7.9
(-2.5)
A 		3.6
(-3)
A 		31.6
(0.4)
A 		49
B 25.5
(1.5)
A 		10.9
(-1.2)
A 		33.6
(3)
A 		1.5
(-3)
A 		12.3
(-1)
A 		15.8
(-0.3)
A 		32
C 25.6
(1.4)
A 		33.4
(3)
A 		6.2
(-2.6)
A 		12.3
(-1.4)
A 		4.5
(-3)
A 		15.6
(-0.7)
A 		29
avr 34.6
(3) 		18.4
(-0.5) 		25.5
(1) 		7.2
(-2.9) 		6.8
(-3) 		21
(0.1) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 6.3
(0.4)
A 		10.5
(3)
A 		0.7
(-3)
A 		8.7
(1.9)
A 		10
B 10.3
(3)
A 		3.6
(-3)
A 		7.8
(0.8)
A 		6.5
(-0.4)
A 		7
C 3.5
(-3)
A 		11.2
(0.2)
A 		8.6
(-0.9)
A 		17.8
(3)
M 		14
avr 6.7
(-1.9) 		8.4
(0.1) 		5.7
(-3) 		11
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 9.7
(3)
A 		3.9
(-1)
A 		8
(1.8)
A 		2
(-2.4)
A 		1.1
(-3)
A 		7.7
(1.6)
A 		9
B 8.9
(3)
A 		3.6
(-0.7)
A 		8.2
(2.5)
A 		0.4
(-3)
A 		5
(0.2)
A 		5.9
(0.9)
A 		9
C 9.5
(2.5)
A 		10.2
(3)
A 		1.6
(-2.9)
A 		2.5
(-2.3)
A 		1.5
(-3)
A 		5.2
(-0.4)
A 		9
avr 9.4
(3) 		5.9
(0.3) 		5.9
(0.3) 		1.6
(-3) 		2.5
(-2.3) 		6.3
(0.6) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182918_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13886
Sequence Type Exemplar sequence
Representative Public ID Y51A2A.6 NCBI
Target Description Y51A2A.6 /REP_DB=WormBase Gene ID /WP=CE20277 /TR=Q9XWP9 /GB=CAA21601.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075181(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075181 NCBI Caenorhabditis elegans Y51A2A.6 (Y51A2A.6) mRNA, complete cds. 11/11 None
GENEFINDER00000039482 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18305288:18306481:1 11/11 None
Y51A2A.6 ENSEMBL cdna:known chromosome:CEL140:V:18305288:18306080:1 gene:Y51A2A.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039471 6/11 Cross Hyb Matching Probes None
SNAP00000039473 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18305287-18306080(+) 99.05 100.0
chrV:18298997-18299773(-) 95.04 95.98
Public Domain and Genome References
Gene Title
Ensembl Y51A2A.6
Entrez Gene 190122 Entrez gene
SwissProt Q9XWP9 EMBL-EBI
WormBase CE20277 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21601 Hypothetical protein Y51A2A.6 [Caenorhabditis elegans] ref|NP_507582.1| Y51A2A.6 [Caenorhabditis elegans] 5.0E-37
blast CAA21601 Hypothetical protein Y51A2A.6 [Caenorhabditis elegans] ref|NP_507582.1| Y51A2A.6 [Caenorhabditis elegans] 5.0E-30
blast CAA22313 Hypothetical protein Y18D10A.10 [Caenorhabditis elegans] ref|NP_493248.1| Y18D10A.10 [Caenorhabditis elegans] 1.0E-12
blast CAA22313 Hypothetical protein Y18D10A.10 [Caenorhabditis elegans] ref|NP_493248.1| Y18D10A.10 [Caenorhabditis elegans] 2.0E-11
blast CAE17978 Hypothetical protein Y18D10A.24 [Caenorhabditis elegans] ref|NP_001021724.1| Y18D10A.24 [Caenorhabditis elegans] 2.0E-11
blast CAE17978 Hypothetical protein Y18D10A.24 [Caenorhabditis elegans] ref|NP_001021724.1| Y18D10A.24 [Caenorhabditis elegans] 1.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507582.1 1 4-22
Y51A2A.6 1 4-22
GENEFINDER00000039482 1 4-22
Sequence
Target Sequence 
>C. ELEGANS:182918_AT
aggctctaccacttatattgcttttactttttggaatatctgcatgcactgcaatctttg
taaaaaataacggcggaggtaagaaccacggtttctcctctgcatcctcttcatcttcat
catcgtcggaagaaggaaagaaacatggacacgggcatcatcatcataatcacggaagac
cttcaagaccacgtccaacacgtccaccacgtgctccagtttgtccgtccgattggatga
cattcgaccgaccacaaggaaaatggtgtgttaaggcattttatgtatccggcaatcaca
gtgttgcggaagcaaagtgcaatgagaattcagctacactgaccggtttccaaacttcgg
atg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGCTCTACCACTTATATTGCTTTT 651 53 17 Antisense
TTGCTTTTACTTTTTGGAATATCTG 69 695 34 Antisense
GAATATCTGCATGCACTGCAATCTT 200 327 50 Antisense
AAACATGGACACGGGCATCATCATC 371 127 157 Antisense
CACGGAAGACCTTCAAGACCACGTC 636 107 187 Antisense
CCAGTTTGTCCGTCCGATTGGATGA 330 271 232 Antisense
GATTGGATGACATTCGACCGACCAC 441 435 247 Antisense
AAGGCATTTTATGTATCCGGCAATC 442 161 289 Antisense
GTATCCGGCAATCACAGTGTTGCGG 146 455 301 Antisense
GAATTCAGCTACACTGACCGGTTTC 252 323 342 Antisense
CTGACCGGTTTCCAAACTTCGGATG 322 197 355 Antisense
Sequence Source Affymetrix Proprietary Database