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[182915_at]

Description D2024.5 /REP_DB=WormBase Gene ID /WP=CE27896 /TR=Q18971 /GB=AAA82285.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 87      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 83      6grp_total > 87      4grp_total > 21      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 352.8
(1.1)
P 		374.4
(2.4)
P 		283.6
(-3)
P 		385.1
(3)
P 		102
B 331.5
(0.3)
P 		335.9
(0.5)
P 		238.3
(-3)
P 		406.2
(3)
P 		168
C 389.1
(2.3)
P 		283.9
(-3)
P 		291.7
(-2.6)
P 		402.4
(3)
P 		119
avr 357.8
(1.1) 		331.4
(-0.1) 		271.2
(-3) 		397.9
(3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 509
1 2 3 4 5 6 range
A 432.7
(-1.3)
P 		406.2
(-1.6)
P 		290.3
(-3)
P 		435.5
(-1.3)
P 		531.7
(-0.2)
P 		799.2
(3)
P 		509
B 345.1
(-3)
P 		387.4
(-1.8)
P 		361.2
(-2.5)
P 		436.4
(-0.3)
P 		499.2
(1.5)
P 		549.8
(3)
P 		205
C 388.8
(-3)
P 		403.8
(-2.7)
P 		427.9
(-2.1)
P 		484.9
(-0.8)
P 		473.1
(-1.1)
P 		654.6
(3)
P 		266
avr 388.9
(-2.4) 		399.1
(-2.2) 		359.8
(-3) 		452.3
(-1.2) 		501.3
(-0.2) 		667.9
(3) 		308
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 128.4
(3)
P 		81.3
(-0.9)
P 		74.1
(-1.5)
P 		56.4
(-3)
P 		72
B 105.7
(3)
P 		83
(0.3)
P 		55.2
(-3)
P 		86.6
(0.7)
P 		51
C 128.8
(3)
P 		81.6
(-1.6)
P 		101.7
(0.3)
P 		67.8
(-3)
P 		61
avr 121
(3) 		82
(-1.6) 		77
(-2.2) 		70.3
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 79.8
(-2.2)
P 		144.5
(0.7)
P 		63.2
(-3)
P 		110.5
(-0.8)
P 		160.4
(1.4)
P 		194.6
(3)
P 		131
B 120.1
(-1.3)
P 		128.9
(-0.9)
P 		87.7
(-3)
P 		115.6
(-1.6)
P 		202.8
(2.9)
P 		205
(3)
P 		117
C 144.1
(-0.7)
P 		123.2
(-1.7)
P 		108.9
(-2.4)
P 		97.5
(-3)
P 		153.1
(-0.3)
P 		219.1
(3)
P 		122
avr 114.7
(-1.6) 		132.2
(-0.7) 		86.6
(-3) 		107.9
(-1.9) 		172.1
(1.3) 		206.2
(3) 		120
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182915_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8917
Sequence Type Exemplar sequence
Representative Public ID D2024.5 NCBI
Target Description D2024.5 /REP_DB=WormBase Gene ID /WP=CE27896 /TR=Q18971 /GB=AAA82285.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171376(10), NM_171375(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171376 NCBI Caenorhabditis elegans D2024.5b (D2024.5) mRNA, complete cds. 10/11 None
NM_171375 NCBI Caenorhabditis elegans D2024.5a (D2024.5) mRNA, complete cds. 10/11 None
SNAP00000033322 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7227584:7228290:-1 10/11 None
GENEFINDER00000033336 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7227465:7228290:-1 10/11 None
D2024.5b.2 ENSEMBL cdna:known chromosome:CEL140:IV:7227267:7228292:-1 gene:D2024.5 10/11 None
D2024.5b.1 ENSEMBL cdna:known chromosome:CEL140:IV:7227267:7228290:-1 gene:D2024.5 10/11 None
D2024.5a.2 ENSEMBL cdna:known chromosome:CEL140:IV:7227268:7228292:-1 gene:D2024.5 10/11 None
D2024.5a.1 ENSEMBL cdna:known chromosome:CEL140:IV:7227268:7228290:-1 gene:D2024.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7227288-7228296(-) 100.0 100.0
Public Domain and Genome References
Ensembl D2024.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_741438 D2024.5a [Caenorhabditis elegans] gb|AAA82285.2| Hypothetical protein D2024.5a [Caenorhabditis elegans] 5.0E-52
blast NP_741439 D2024.5b [Caenorhabditis elegans] gb|AAM98042.1| Hypothetical protein D2024.5b [Caenorhabditis elegans] 4.0E-50
blast NP_741438 D2024.5a [Caenorhabditis elegans] gb|AAA82285.2| Hypothetical protein D2024.5a [Caenorhabditis elegans] 2.0E-47
blast NP_741439 D2024.5b [Caenorhabditis elegans] gb|AAM98042.1| Hypothetical protein D2024.5b [Caenorhabditis elegans] 2.0E-47
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741439.1 1 53-75
NP_741438.1 1 53-75
D2024.5b.2 1 53-75
D2024.5b.1 1 53-75
D2024.5a.2 1 53-75
D2024.5a.1 1 53-75
SNAP00000033322 1 53-75
GENEFINDER00000033336 1 53-75
Sequence
Target Sequence 
>C. ELEGANS:182915_AT
gtacggtatcaaccagcacgactacaactaccacgacggaaattccattgactacatctt
ttcctccaagtgatcatacaactgcaacgtcgatcgccttcatttccttggtagtttttg
gagtagcatgtgctctcattgcgaaaattgtgataagccataagaaaaagagagctgaat
taatcggatcagcacgatggagaatttctgcttcaagacaaagcgcatcttcggcttcta
gtggcggaatgggccaaaattcttcagccacttatcttcccatgggccgtggaggaaaca
atcgctcactgaacaatcaaagacaaccgctgaactcactggatcacccgacagccgatc
gtctcgattgggaacgacagttcttcgatgattccgaagctacagtacactccttcaagg
ct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACGGTATCAACCAGCACGACTAC 423 457 83 Antisense
ACAACTACCACGACGGAAATTCCAT 249 111 106 Antisense
ATTCCATTGACTACATCTTTTCCTC 588 7 124 Antisense
ACTACATCTTTTCCTCCAAGTGATC 514 101 133 Antisense
TCGCCTTCATTTCCTTGGTAGTTTT 186 599 176 Antisense
AGTAGCATGTGCTCTCATTGCGAAA 91 63 204 Antisense
AGACAAAGCGCATCTTCGGCTTCTA 35 73 298 Antisense
TTCGGCTTCTAGTGGCGGAATGGGC 506 601 312 Antisense
AAAATTCTTCAGCCACTTATCTTCC 110 135 338 Antisense
TTATCTTCCCATGGGCCGTGGAGGA 99 673 354 Antisense
AGCTACAGTACACTCCTTCAAGGCT 64 79 480 Antisense
Sequence Source Affymetrix Proprietary Database