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[182914_at]

Description F13E9.10 /REP_DB=WormBase Gene ID /WP=CE05612 /TR=Q19415 /GB=CAA93413.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 2.2
(-2.7)
A 		1.7
(-3)
A 		6.6
(0.4)
A 		10.4
(3)
A 		9
B 2.4
(-3)
A 		2.3
(-3)
A 		4.6
(-2.7)
A 		55
(3)
A 		53
C 4.3
(-2.8)
A 		5.4
(-2.7)
A 		1
(-3)
A 		102.5
(3)
A 		102
avr 3
(-3) 		3.1
(-3) 		4.1
(-2.9) 		56
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3.4
(-1.6)
A 		3.5
(-1.6)
A 		4.3
(-1)
A 		3
(-1.9)
A 		1.3
(-3)
A 		10.5
(3)
A 		9
B 1.4
(-2.8)
A 		1.5
(-2.7)
A 		3.8
(1.2)
A 		4.9
(3)
A 		1.3
(-3)
A 		2.6
(-0.8)
A 		4
C 0.7
(-3)
A 		15.2
(3)
A 		3.7
(-1.8)
A 		15.1
(3)
A 		1.8
(-2.5)
A 		4.4
(-1.5)
A 		15
avr 1.8
(-2.7) 		6.7
(2) 		3.9
(-0.7) 		7.7
(3) 		1.5
(-3) 		5.8
(1.2) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 0.8
(-1.2)
A 		0.4
(-3)
A 		1.7
(3)
A 		1.5
(2.1)
A 		1
B 0.8
(-2.9)
A 		0.6
(-3)
A 		1.1
(-2.7)
A 		11.7
(3)
A 		11
C 1.4
(-2.6)
A 		1.5
(-2.6)
A 		0.4
(-3)
A 		17.3
(3)
A 		17
avr 1
(-2.9) 		0.8
(-3) 		1.1
(-2.8) 		10.2
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.6
(-2.5)
A 		1.2
(-0.8)
A 		0.9
(-1.6)
A 		0.8
(-1.9)
A 		0.4
(-3)
A 		2.6
(3)
A 		2
B 0.5
(-3)
A 		0.5
(-3)
A 		0.9
(0)
A 		1.3
(3)
A 		0.5
(-3)
A 		1
(0.8)
A 		1
C 0.3
(-3)
A 		4.7
(3)
A 		0.9
(-2.2)
A 		3
(0.7)
A 		0.6
(-2.6)
A 		1.5
(-1.4)
A 		4
avr 0.5
(-3) 		2.1
(3) 		0.9
(-1.5) 		1.7
(1.5) 		0.5
(-3) 		1.7
(1.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182914_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9987
Sequence Type Exemplar sequence
Representative Public ID F13E9.10 NCBI
Target Description F13E9.10 /REP_DB=WormBase Gene ID /WP=CE05612 /TR=Q19415 /GB=CAA93413.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069621(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069621 NCBI Caenorhabditis elegans F13E9.10 (F13E9.10) mRNA, complete cds. 11/11 None
SNAP00000017044 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10885209:10885986:-1 11/11 None
GENEFINDER00000017062 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10885209:10885986:-1 11/11 None
F13E9.10 ENSEMBL cdna:known chromosome:CEL140:IV:10885209:10885986:-1 gene:F13E9.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10885214-10885992(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13E9.10
Entrez Gene 184428 Entrez gene
SwissProt Q19415 EMBL-EBI
WormBase CE05612 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93413 Hypothetical protein F13E9.10 [Caenorhabditis elegans] ref|NP_502022.1| F13E9.10 [Caenorhabditis elegans] 1.0E-117
Sequence
Target Sequence 
>C. ELEGANS:182914_AT
gaaagcttattgtattgtcatcgcattttgaggagcaggacaatttccgaagaattcttt
caaacaatgctcgtcgtctaactcagatttacgaggaatttgttgcagccactcagagaa
tcaaaaaagccaaatattctgctcaagctattcttgcaaaccgaactcatacagctcagg
aacaatatgaacaagcgattcgtcttgacaagagatatccattagaaatgtcagttcttt
tggatatctgctcaacaatgggatacccaacgacaaaggcagttatcgcaagttcattga
agaatattccaaaaacaaatcaattggctgctgaccttgaagaatacacgactgaagcac
aatcaactggatatttcattgcacagggacttcatgatactccatatgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGCTTATTGTATTGTCATCGCA 609 359 170 Antisense
GAATTCTTTCAAACAATGCTCGTCG 241 325 221 Antisense
AATGCTCGTCGTCTAACTCAGATTT 286 165 235 Antisense
GGAATTTGTTGCAGCCACTCAGAGA 319 533 264 Antisense
CAAGCTATTCTTGCAAACCGAACTC 130 187 313 Antisense
AACCGAACTCATACAGCTCAGGAAC 265 147 328 Antisense
AGTTCTTTTGGATATCTGCTCAACA 115 63 402 Antisense
AAGGCAGTTATCGCAAGTTCATTGA 606 161 445 Antisense
CAATTGGCTGCTGACCTTGAAGAAT 125 179 490 Antisense
GGATATTTCATTGCACAGGGACTTC 538 509 538 Antisense
GGGACTTCATGATACTCCATATGTG 431 495 555 Antisense
Sequence Source Affymetrix Proprietary Database