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[182913_at] 7TM chemoreceptor, srw family

Description K03D7.11 /REP_DB=WormBase Gene ID /WP=CE18847 /TR=Q9XUV1 /GB=CAB04561.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 56      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 2.5
(-1.6)
A 		4.4
(3)
A 		2.3
(-2)
A 		1.9
(-3)
A 		3
B 4.2
(-2.4)
A 		1.9
(-3)
A 		23.2
(3)
A 		2.3
(-2.9)
A 		21
C 3.4
(-2.3)
A 		3.5
(-2)
A 		3.1
(-3)
A 		5.6
(3)
A 		3
avr 3.4
(-2.9) 		3.3
(-3) 		9.5
(3) 		3.3
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 2.2
(-0.8)
A 		1
(-3)
A 		4.2
(3)
A 		2.9
(0.6)
A 		2.6
(0)
A 		2.4
(-0.4)
A 		3
B 1.9
(-0)
A 		1.2
(-2.6)
A 		2.7
(3)
A 		1.1
(-3)
A 		2
(0.4)
A 		1.3
(-2.3)
A 		2
C 2
(-0.2)
A 		2.2
(0.5)
A 		2.9
(3)
A 		2.8
(2.6)
A 		2.4
(1.2)
A 		1.2
(-3)
A 		2
avr 2
(-1.3) 		1.5
(-3) 		3.3
(3) 		2.3
(-0.3) 		2.3
(-0.3) 		1.6
(-2.7) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.9
(3)
A 		0.9
(3)
A 		0.6
(-0)
A 		0.3
(-3)
A 		1
B 1.4
(-1.9)
A 		0.5
(-3)
A 		5.4
(3)
A 		0.5
(-3)
A 		5
C 1.1
(3)
A 		1
(-0)
A 		1.1
(3)
A 		0.9
(-3)
A 		0
avr 1.1
(-1.3) 		0.8
(-2.3) 		2.4
(3) 		0.6
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.4
(-2)
A 		0.3
(-3)
A 		0.9
(3)
A 		0.7
(1)
A 		0.8
(2)
A 		0.6
(-0)
A 		1
B 0.7
(1.8)
A 		0.4
(-1.8)
A 		0.7
(1.8)
A 		0.3
(-3)
A 		0.8
(3)
A 		0.5
(-0.6)
A 		1
C 0.8
(3)
A 		0.7
(1.5)
A 		0.8
(3)
A 		0.6
(-0)
A 		0.8
(3)
A 		0.4
(-3)
A 		0
avr 0.6
(-1) 		0.5
(-3) 		0.8
(3) 		0.5
(-3) 		0.8
(3) 		0.5
(-3) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182913_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13884
Sequence Type Exemplar sequence
Representative Public ID K03D7.11 NCBI
Target Description K03D7.11 /REP_DB=WormBase Gene ID /WP=CE18847 /TR=Q9XUV1 /GB=CAB04561.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075035(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075035 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-32) (srw-32) mRNA, complete cds. 11/11 None
GENEFINDER00000027367 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17508386:17512790:1 11/11 None
K03D7.11 ENSEMBL cdna:known chromosome:CEL140:V:17511369:17512790:1 gene:K03D7.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17511368-17512790(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-32
Ensembl K03D7.11
Entrez Gene 186949 Entrez gene
SwissProt Q9XUV1 EMBL-EBI
WormBase CE18847 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04561 Hypothetical protein K03D7.11 [Caenorhabditis elegans] ref|NP_507436.1| Serpentine Receptor, class W family member (srw-32) [Caenorhabditis elegans] 1.0E-172
blast CAB04560 Hypothetical protein K03D7.2 [Caenorhabditis elegans] ref|NP_507435.2| Serpentine Receptor, class W family member (srw-31) [Caenorhabditis elegans] 1.0E-152
blast CAB04561 Hypothetical protein K03D7.11 [Caenorhabditis elegans] ref|NP_507436.1| Serpentine Receptor, class W family member (srw-32) [Caenorhabditis elegans] 1.0E-151
blast CAB04560 Hypothetical protein K03D7.2 [Caenorhabditis elegans] ref|NP_507435.2| Serpentine Receptor, class W family member (srw-31) [Caenorhabditis elegans] 1.0E-145
blast CAE17878 Hypothetical protein K10G4.9 [Caenorhabditis elegans] ref|NP_001024051.1| Serpentine Receptor, class W family member (srw-30) [Caenorhabditis elegans] 1.0E-95
blast CAE17878 Hypothetical protein K10G4.9 [Caenorhabditis elegans] ref|NP_001024051.1| Serpentine Receptor, class W family member (srw-30) [Caenorhabditis elegans] 3.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 5.0E-29
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 5.2E-33
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 5.0E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507436.1 7 37-56,69-91,129-148,161-178,229-251,285-307,317-339
K03D7.11 7 37-56,69-91,129-148,161-178,229-251,285-307,317-339
GENEFINDER00000027367 13 55-77,90-112,152-171,184-203,303-325,338-360,375-394,407-429,467-486,499-516,567-589,623-645,655-677
Sequence
Target Sequence 
>C. ELEGANS:182913_AT
ataaccctattaattctaccatttggagcgtctaactattccaagttaagctccacttca
gttagagaatggacgccatttaccaattgtataactttttcgggaaattcgactaaaatt
aagtttgattttcactccacggaattgtttggaagcacagacgttttcaagattgctctt
cttattgaaggaattttcttagaattcacgccatcaattattttaccaattaccactata
agtttgatcatggatttaagaaaggcacggaaaaactcacttttcacgaaaagttcatta
agtagcagtgatactgtacgatctataaaactagtcgcttttgtgacaatcaccttttta
ttcacaactacaccacttggctttatgtatattgttgggatttttatagtcacgatgcct
ggcttgattatgctagttacaaagtttgcatgggtgttaacgtttctgacaaccatcagc
ggcatcgtaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAACCCTATTAATTCTACCATTTG 225 25 517 Antisense
TACCATTTGGAGCGTCTAACTATTC 530 647 533 Antisense
ATTCCAAGTTAAGCTCCACTTCAGT 479 5 554 Antisense
GAATGGACGCCATTTACCAATTGTA 327 333 583 Antisense
AAGTTTGATTTTCACTCCACGGAAT 168 157 637 Antisense
ACAGACGTTTTCAAGATTGCTCTTC 148 109 673 Antisense
AGCAGTGATACTGTACGATCTATAA 522 77 820 Antisense
TCACCTTTTTATTCACAACTACACC 468 625 866 Antisense
TTTTATAGTCACGATGCCTGGCTTG 591 675 918 Antisense
GCCTGGCTTGATTATGCTAGTTACA 581 283 933 Antisense
TGACAACCATCAGCGGCATCGTACA 546 571 983 Antisense
Sequence Source Affymetrix Proprietary Database