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[182912_at]

Description C48E7.3 /REP_DB=WormBase Gene ID /WP=CE08818 /TR=O02080 /GB=AAK21356.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 76      4grp_highest_8_8 > 43      4grp_high_8_8 > 24      6grp_highest_nonorm > 92      6grp_total > 77      4grp_total > 39      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 315.8
(1.7)
P 		309.3
(1.4)
P 		343.3
(3)
P 		214.1
(-3)
P 		129
B 320.4
(1.7)
P 		234
(-1.4)
P 		189.2
(-3)
P 		356.1
(3)
P 		167
C 346.3
(3)
P 		228.4
(-3)
P 		301.4
(0.7)
P 		275.9
(-0.6)
P 		118
avr 327.5
(3) 		257.2
(-3) 		278
(-1.2) 		282
(-0.9) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 316
1 2 3 4 5 6 range
A 186.8
(-3)
P 		246.9
(-0.6)
P 		272.8
(0.5)
P 		243.3
(-0.7)
P 		262.1
(0)
P 		335.4
(3)
P 		149
B 211.9
(-2.2)
P 		294.8
(-0.6)
P 		170.1
(-3)
P 		187.3
(-2.7)
P 		286.5
(-0.8)
P 		486.5
(3)
P 		316
C 176.1
(-3)
P 		310.7
(-0.3)
P 		234.3
(-1.8)
P 		288.8
(-0.8)
P 		248.6
(-1.6)
P 		479.6
(3)
P 		304
avr 191.6
(-3) 		284.1
(-0.7) 		225.7
(-2.2) 		239.8
(-1.8) 		265.7
(-1.2) 		433.8
(3) 		242
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 115
(3)
P 		67.2
(-0.4)
P 		89.7
(1.2)
P 		31.3
(-3)
P 		84
B 102.2
(3)
P 		57.8
(-1.6)
P 		43.9
(-3)
P 		75.9
(0.3)
P 		58
C 114.6
(3)
P 		65.7
(-1.3)
P 		105
(2.2)
P 		46.5
(-3)
P 		68
avr 110.6
(3) 		63.6
(-1.7) 		79.5
(-0.1) 		51.2
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 34.4
(-3)
P 		87.8
(3)
P 		59.4
(-0.2)
P 		61.7
(0.1)
P 		79.1
(2)
P 		81.7
(2.3)
P 		53
B 73.7
(-1.6)
P 		98.1
(-0.6)
P 		41.3
(-3)
P 		49.6
(-2.6)
P 		116.4
(0.2)
P 		181.4
(3)
P 		140
C 65.3
(-2.6)
P 		94.8
(-0.9)
P 		59.6
(-2.9)
P 		58.1
(-3)
P 		80.4
(-1.7)
P 		160.6
(3)
P 		103
avr 57.8
(-2.7) 		93.6
(-0.3) 		53.4
(-3) 		56.5
(-2.8) 		92
(-0.4) 		141.2
(3) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182912_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1311
Sequence Type Exemplar sequence
Representative Public ID C48E7.3 NCBI
Target Description C48E7.3 /REP_DB=WormBase Gene ID /WP=CE08818 /TR=O02080 /GB=AAK21356.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059405(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059405 NCBI Caenorhabditis elegans LiPid Depleted family member (lpd-2) (lpd-2) mRNA, complete cds. 11/11 None
SNAP00000002343 ENSEMBL cdna:SNAP chromosome:CEL140:I:6261836:6262975:1 11/11 None
GENEFINDER00000002351 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6261836:6262975:1 11/11 None
C48E7.3 ENSEMBL cdna:known chromosome:CEL140:I:6261836:6263012:1 gene:C48E7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6261147-6262904(+) 94.9 100.0
Public Domain and Genome References
Gene Title
Gene Symbol lpd-2
Ensembl C48E7.3
Entrez Gene 172320 Entrez gene
SwissProt Q8IG68 EMBL-EBI
WormBase CE29953 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:261419_AT leucine zipper factor-related at
CANINE:1605075_AT similar to Protein C14orf120 cfa
CANINE:1600905_AT similar to Protein C14orf120 cfa
CANINE_2:CFA.2118.1.A1_AT similar to Protein C14orf120 cfa
CANINE_2:CFA.2119.1.S1_S_AT similar to Protein C14orf120 cfa
DROSOPHILA_2:1633629_AT dm
DROSGENOME1:145846_AT dm
HG-U133A:213794_S_AT chromosome 14 open reading frame 120 hs
HG-U133A_2:213794_S_AT chromosome 14 open reading frame 120 hs
HG-U133_PLUS_2:213794_S_AT chromosome 14 open reading frame 120 hs
HG-U133_PLUS_2:216263_S_AT chromosome 14 open reading frame 120 hs
HG-U133A_2:216263_S_AT chromosome 14 open reading frame 120 hs
HG-U133A:216263_S_AT chromosome 14 open reading frame 120 hs
HU35KSUBA:RC_AA252953_AT chromosome 14 open reading frame 120 hs
U133_X3P:HS.9043.1.S1_3P_A_AT chromosome 14 open reading frame 120 hs
U133_X3P:HS.9043.0.S1_3P_A_AT chromosome 14 open reading frame 120 hs
HG-U95AV2:38255_AT chromosome 14 open reading frame 120 hs
HG-U95AV2:38256_S_AT chromosome 14 open reading frame 120 hs
MG-U74AV2:93776_AT RIKEN cDNA 1500001L15 gene mm
MOE430A:1438318_X_AT RIKEN cDNA 1500001L15 gene mm
MOUSE430A_2:1438318_X_AT RIKEN cDNA 1500001L15 gene mm
MOUSE430_2:1438318_X_AT RIKEN cDNA 1500001L15 gene mm
MOE430A:1428226_AT RIKEN cDNA 1500001L15 gene mm
MOUSE430A_2:1428226_AT RIKEN cDNA 1500001L15 gene mm
MOUSE430_2:1428226_AT RIKEN cDNA 1500001L15 gene mm
MU19KSUBA:TC20539_AT RIKEN cDNA 1500001L15 gene, mRNA (cDNA clone IMAGE:5345281) mm
MU19KSUBC:TC35522_AT RIKEN cDNA 1500001L15 gene, mRNA (cDNA clone IMAGE:5345281) mm
MU19KSUBC:TC35522_G_AT RIKEN cDNA 1500001L15 gene, mRNA (cDNA clone IMAGE:5345281) mm
RG-U34B:RC_AI060147_AT similar to CG11030-PA (predicted) rn
RG-U34C:RC_AI112310_AT similar to CG11030-PA (predicted) rn
RAE230A:1372433_AT similar to CG11030-PA (predicted) rn
RAT230_2:1372433_AT similar to CG11030-PA (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAN60524 Lipid depleted protein 2 [Caenorhabditis elegans] ref|NP_491806.2| LiPid Depleted family member (lpd-2) [Caenorhabditis elegans] 1.0E-118
blast T15174 hypothetical protein C48E7.3 - Caenorhabditis elegans 1.0E-118
blast CAE67151 Hypothetical protein CBG12576 [Caenorhabditis briggsae] 3.0E-99
Sequence
Target Sequence 
>C. ELEGANS:182912_AT
ggtcaagcgccgagagtggagcatcaaatggttcttccaagggaaatcacagagttcgat
tagacaatatggacgttgaaggagatgaagaagaagaggaggaagatgaagatgatgagg
aaggaaaaggagcaaaggaagttaagaaatatgtggcaccaagaattagagcagttcgat
atgaagaagaagacgaagctccgaacaagcaacaagaaaaggcaaaacgtcgtgcaatgc
aaagtagtcttattatggaactcaaaaatcaatacagtgatgctccggaagaaattcgag
agatgagtgagaagaaatatcaatatgatcgtgagagagaacgttatgaggaggataact
tcaccagaattcgattgaataaggatcagaaacgacgaagcgaacaactaggacgttcgg
aaactcttgatgatttgctcagttttggagattatatgatgagaggagaagatggtagag
cactttccgaaggaaataaaagaaagcgtgctacatcttctggtgctggcggggacacaa
aacgacaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCAAGCGCCGAGAGTGGAGCATC 681 503 638 Antisense
GGAGCATCAAATGGTTCTTCCAAGG 163 521 655 Antisense
GACGAAGCTCCGAACAAGCAACAAG 266 379 829 Antisense
AAAGGCAAAACGTCGTGCAATGCAA 349 119 855 Antisense
TCAATACAGTGATGCTCCGGAAGAA 295 633 906 Antisense
GGAGGATAACTTCACCAGAATTCGA 20 515 987 Antisense
CAACTAGGACGTTCGGAAACTCTTG 86 105 1042 Antisense
GGAAACTCTTGATGATTTGCTCAGT 558 527 1056 Antisense
AGATGGTAGAGCACTTTCCGAAGGA 158 67 1107 Antisense
AGAAAGCGTGCTACATCTTCTGGTG 354 73 1138 Antisense
GCTGGCGGGGACACAAAACGACACA 253 293 1162 Antisense
Sequence Source Affymetrix Proprietary Database