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[182911_at]

Description C16D9.3 /REP_DB=WormBase Gene ID /WP=CE06839 /TR=Q22897 /GB=AAB18282.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 4.9
(-3)
A 		8.4
(-2.6)
A 		21.6
(-1.3)
A 		64.1
(3)
A 		59
B 18.7
(-1.9)
A 		78.9
(3)
A 		18
(-2)
A 		5.9
(-3)
A 		73
C 48.5
(-0.3)
A 		39.1
(-1.5)
A 		27.8
(-3)
A 		73.6
(3)
A 		46
avr 24
(-2.6) 		42.1
(1.6) 		22.5
(-3) 		47.9
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 14.7
(-1.7)
A 		22
(-0.2)
A 		37.4
(3)
A 		8.8
(-3)
A 		24.8
(0.4)
A 		8.6
(-3)
A 		29
B 4.7
(-3)
A 		28.9
(0.1)
A 		51.9
(3)
A 		7.2
(-2.7)
A 		31.5
(0.4)
A 		22
(-0.8)
A 		47
C 25.5
(-0.5)
A 		36
(0.7)
A 		4.5
(-3)
A 		55.5
(3)
A 		23.1
(-0.8)
A 		9.8
(-2.4)
A 		51
avr 15
(-2.5) 		29
(2.2) 		31.3
(3) 		23.8
(0.5) 		26.5
(1.4) 		13.5
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 1.8
(-3)
A 		1.8
(-3)
A 		5.6
(-0)
A 		9.4
(3)
A 		8
B 6
(-1.5)
A 		19.5
(3)
A 		4.2
(-2)
A 		1.3
(-3)
A 		18
C 16.1
(3)
A 		11.2
(-1.6)
A 		9.7
(-3)
A 		12.4
(-0.5)
A 		6
avr 8
(-0.9) 		10.8
(3) 		6.5
(-3) 		7.7
(-1.3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.7
(-2.4)
A 		7.8
(2.7)
A 		8.1
(3)
A 		2.2
(-2.9)
A 		7.5
(2.4)
A 		2.1
(-3)
A 		6
B 1.6
(-3)
A 		9.6
(1.3)
A 		12.6
(2.9)
A 		1.9
(-2.8)
A 		12.8
(3)
A 		8.2
(0.5)
A 		11
C 9.5
(2)
A 		11
(2.9)
A 		1.1
(-3)
A 		11.2
(3)
A 		7.5
(0.8)
A 		3.3
(-1.7)
A 		10
avr 4.6
(-2.9) 		9.5
(3) 		7.3
(0.4) 		5.1
(-2.3) 		9.3
(2.8) 		4.5
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182911_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12085
Sequence Type Exemplar sequence
Representative Public ID C16D9.3 NCBI
Target Description C16D9.3 /REP_DB=WormBase Gene ID /WP=CE06839 /TR=Q22897 /GB=AAB18282.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072722
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000043385 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8235559:8242864:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072722 8/11 Cross Hyb Matching Probes None
SNAP00000043375 7/11 Cross Hyb Matching Probes None
C16D9.3 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8241549-8242865(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN84865 Roller: helically twisted, animals roll when moving protein 3, isoform b [Caenorhabditis elegans] ref|NP_872126.1| ROLler: helically twisted, animals roll when moving family member (rol-3) [Caenorhabditis elegans] 0.0
blast AAN84864 Roller: helically twisted, animals roll when moving protein 3, isoform a [Caenorhabditis elegans] ref|NP_505122.3| ROLler: helically twisted, animals roll when moving family member (rol-3) [Caenorhabditis elegans] 0.0
blast T29551 hypothetical protein C16D9.2 - Caenorhabditis elegans 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000043385 1 16-38
Sequence
Target Sequence 
>C. ELEGANS:182911_AT
agttatgttaattcgttgcccaaagatgaaaaattagaattccgacagttcaattcttcg
tgttatcctaacttcgtgaacaattggaagtatcacttcaaaggattaatattagctgag
gtactcagagaatttccaattatttggtggattgatgccaatatgaaaatgataaaacct
gatgtcatcagcaaattattcaaagaaatcgcttcaaagcgaataagtgattattactcg
tcgttgatttctttccgagaaactgatcacagtaacttcgatgttttacatccagaccta
ctatcctattttccatccgactccattcaacttctacaacaagaacgtcaaattggaccg
ggaaatatgtttgttgttcgaacaaaatatacactgaaaattgtaaaatggtgggtcctc
tgttcacttacagagaattgtatgaaccctcctggatctcaactgaaatgtcattttgat
aaaagccgagagcgtctacatgcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTATGTTAATTCGTTGCCCAAAG 78 61 484 Antisense
ATTCCGACAGTTCAATTCTTCGTGT 367 5 522 Antisense
TTCTTCGTGTTATCCTAACTTCGTG 477 683 537 Antisense
ATTACTCGTCGTTGATTTCTTTCCG 257 13 716 Antisense
AACTGATCACAGTAACTTCGATGTT 41 143 744 Antisense
ATGTTTTACATCCAGACCTACTATC 303 45 764 Antisense
CATCCAGACCTACTATCCTATTTTC 370 211 772 Antisense
AAAATGGTGGGTCCTCTGTTCACTT 493 131 888 Antisense
GAATTGTATGAACCCTCCTGGATCT 637 321 918 Antisense
CCCTCCTGGATCTCAACTGAAATGT 71 261 930 Antisense
AAAGCCGAGAGCGTCTACATGCAAA 468 125 965 Antisense
Sequence Source Affymetrix Proprietary Database