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[182910_at]

Description Y15E3A.4 /REP_DB=WormBase Gene ID /WP=CE21371 /TR=Q9U2R3 /GB=CAB60332.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 07      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 12      6grp_total > 05      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14338
1 2 3 4 range
A 2914.9
(-2.4)
P 		1935.6
(-2.9)
P 		1667.5
(-3)
P 		14596.5
(3)
P 		12929
B 2909.7
(-2.6)
P 		2085.3
(-3)
P 		2179.3
(-3)
P 		16005.4
(3)
P 		13920
C 2980
(-2.5)
P 		2622.5
(-2.6)
P 		1769.9
(-3)
P 		15515.6
(3)
P 		13746
avr 2934.9
(-2.5) 		2214.5
(-2.8) 		1872.2
(-3) 		15372.5
(3) 		13500

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1391
1 2 3 4 5 6 range
A 2616.3
(3)
P 		1817.7
(-1.5)
P 		1702.3
(-2.2)
P 		1657.2
(-2.4)
P 		1578.2
(-2.9)
P 		1555.6
(-3)
P 		1061
B 2735
(3)
P 		2171.7
(0.3)
P 		1871.9
(-1.2)
P 		2082.9
(-0.1)
P 		1533.1
(-2.8)
P 		1488.4
(-3)
P 		1247
C 2669.5
(3)
P 		2067.6
(0.3)
P 		1783.1
(-1)
P 		1994.4
(-0.1)
P 		1344.2
(-3)
P 		1419.7
(-2.7)
P 		1325
avr 2673.6
(3) 		2019
(-0.3) 		1785.8
(-1.5) 		1911.5
(-0.8) 		1485.2
(-3) 		1487.9
(-3) 		1188
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2991
1 2 3 4 range
A 1061.3
(-0.8)
P 		420.2
(-3)
P 		435.9
(-2.9)
P 		2136.6
(3)
P 		1716
B 927.9
(-2.1)
P 		515
(-3)
P 		505
(-3)
P 		3410.8
(3)
P 		2906
C 986.5
(-1.9)
P 		754
(-2.6)
P 		616.9
(-3)
P 		2616.2
(3)
P 		1999
avr 991.9
(-1.7) 		563.1
(-2.9) 		519.3
(-3) 		2721.2
(3) 		2202

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 619
1 2 3 4 5 6 range
A 482.3
(-0.6)
P 		646.5
(3)
P 		370.7
(-3)
P 		420.3
(-1.9)
P 		476.2
(-0.7)
P 		378.7
(-2.8)
P 		276
B 951.6
(3)
P 		722.9
(0.2)
P 		454.5
(-3)
P 		551.7
(-1.8)
P 		622.9
(-1)
P 		555
(-1.8)
P 		497
C 989.5
(3)
P 		630.9
(-0.7)
P 		453.8
(-2.5)
P 		401.1
(-3)
P 		435
(-2.7)
P 		475.2
(-2.2)
P 		588
avr 807.8
(3) 		666.8
(0.8) 		426.3
(-3) 		457.7
(-2.5) 		511.4
(-1.7) 		469.6
(-2.3) 		382
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182910_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17408
Sequence Type Exemplar sequence
Representative Public ID Y15E3A.4 NCBI
Target Description Y15E3A.4 /REP_DB=WormBase Gene ID /WP=CE21371 /TR=Q9U2R3 /GB=CAB60332.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078138(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078138 NCBI Caenorhabditis elegans Y15E3A.4 (Y15E3A.4) mRNA, complete cds. 11/11 None
SNAP00000023755 ENSEMBL cdna:SNAP chromosome:CEL140:X:15330912:15333381:1 11/11 None
GENEFINDER00000023758 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15330912:15333610:1 11/11 None
Y15E3A.4 ENSEMBL cdna:known chromosome:CEL140:X:15330881:15333867:1 gene:Y15E3A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15330911-15333610(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y15E3A.4
Entrez Gene 181623 Entrez gene
SwissProt Q9U2R3 EMBL-EBI
WormBase CE21371 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60332 Hypothetical protein Y15E3A.4 [Caenorhabditis elegans] ref|NP_510539.1| Y15E3A.4 [Caenorhabditis elegans] 0.0
blast CAE63299 Hypothetical protein CBG07685 [Caenorhabditis briggsae] 0.0
blast AAC17018 Hypothetical protein H11E01.2 [Caenorhabditis elegans] ref|NP_508300.2| H11E01.2 [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510539.1 12 21-43,71-93,100-119,129-151,158-177,192-211,251-273,288-310,323-345,349-371,384-406,416-438
Y15E3A.4 12 21-43,71-93,100-119,129-151,158-177,192-211,251-273,288-310,323-345,349-371,384-406,416-438
SNAP00000023755 12 21-43,71-93,100-119,124-141,146-166,176-198,238-260,275-297,310-332,336-358,371-393,403-425
GENEFINDER00000023758 12 21-43,71-93,100-119,129-151,158-177,192-211,251-273,288-310,323-345,349-371,384-406,416-438
Sequence
Target Sequence 
>C. ELEGANS:182910_AT
gatgtcccagttcattgtcatgtacggaccaacattcttgaaagaagtcctcggatttgc
tgtcaatcacaccggatatttcgtcgcagtaccacgtgctctgcatctagccttcaagat
catctctggagttgccagtgatcgtatccagttctggtcggaaaaaaccaagatgagaat
attcaacacaattgctctgatggtgtctggagcattcttctgcattcttggatacttacc
gaaagagcaagctcatttatcgttggtggctcttcttgtaattgaatgttccaccgggtt
catctgtggaggattttacaagtgtgccacattggtcgccagacaacactctcactttgt
gctttctcaaatccaatttatcaagtgtctgtccctattcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTCCCAGTTCATTGTCATGTAC 467 409 807 Antisense
GAAGTCCTCGGATTTGCTGTCAATC 104 337 850 Antisense
TCACACCGGATATTTCGTCGCAGTA 137 629 873 Antisense
GCTCTGCATCTAGCCTTCAAGATCA 127 301 904 Antisense
AGTTGCCAGTGATCGTATCCAGTTC 321 63 936 Antisense
GTGTCTGGAGCATTCTTCTGCATTC 354 487 1009 Antisense
TCATTTATCGTTGGTGGCTCTTCTT 470 619 1059 Antisense
AATGTTCCACCGGGTTCATCTGTGG 585 163 1091 Antisense
TGCCACATTGGTCGCCAGACAACAC 138 587 1131 Antisense
CAGACAACACTCTCACTTTGTGCTT 434 205 1146 Antisense
TTATCAAGTGTCTGTCCCTATTCAT 57 681 1184 Antisense
Sequence Source Affymetrix Proprietary Database