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[182908_at]

Description C01G5.7 /REP_DB=WormBase Gene ID /WP=CE06753 /TR=Q17570 /GB=AAB37737.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 11.8
(-1.2)
A 		4.3
(-2.9)
A 		4
(-3)
A 		29.6
(3)
A 		26
B 2.4
(2.7)
A 		2.5
(3)
A 		0.3
(-3)
A 		1.9
(1.4)
A 		2
C 1.8
(-3)
A 		17.3
(1.2)
A 		2
(-2.9)
A 		24.2
(3)
A 		22
avr 5.3
(-1.8) 		8
(-0.9) 		2.1
(-3) 		18.6
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 3.1
(-2.5)
A 		4.1
(-2.2)
A 		1.7
(-3)
A 		20.2
(3)
A 		3
(-2.6)
A 		2.6
(-2.7)
A 		19
B 2.7
(-2.5)
A 		1.3
(-3)
A 		4.3
(-1.9)
A 		18.4
(3)
A 		1.9
(-2.8)
A 		1.5
(-2.9)
A 		17
C 2.4
(-2.6)
A 		21.7
(3)
A 		0.9
(-3)
A 		21.6
(3)
A 		2.6
(-2.5)
A 		1.1
(-2.9)
A 		21
avr 2.7
(-2.7) 		9
(-0.6) 		2.3
(-2.8) 		20.1
(3) 		2.5
(-2.7) 		1.7
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 4.3
(3)
A 		0.9
(-3)
A 		1.1
(-2.6)
A 		4.3
(3)
A 		3
B 0.8
(3)
A 		0.6
(1.3)
A 		0.1
(-3)
A 		0.4
(-0.4)
A 		1
C 0.6
(-3)
A 		5
(3)
A 		0.7
(-2.9)
A 		4.1
(1.8)
A 		4
avr 1.9
(0.4) 		2.2
(1.2) 		0.6
(-3) 		2.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.6
(-2.7)
A 		1.5
(-1.6)
A 		0.4
(-3)
A 		5.1
(3)
A 		0.9
(-2.4)
A 		0.6
(-2.7)
A 		5
B 0.9
(-2.3)
A 		0.4
(-3)
A 		1.1
(-2.1)
A 		4.9
(3)
A 		0.8
(-2.5)
A 		0.5
(-2.9)
A 		5
C 0.9
(-2.3)
A 		6.6
(3)
A 		0.2
(-3)
A 		4.4
(0.9)
A 		0.9
(-2.3)
A 		0.4
(-2.8)
A 		6
avr 0.8
(-2.6) 		2.8
(0.2) 		0.6
(-2.9) 		4.8
(3) 		0.9
(-2.4) 		0.5
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182908_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10939
Sequence Type Exemplar sequence
Representative Public ID C01G5.7 NCBI
Target Description C01G5.7 /REP_DB=WormBase Gene ID /WP=CE06753 /TR=Q17570 /GB=AAB37737.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068589
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000022687 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6518158:6519780:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068589 6/11 Cross Hyb Matching Probes None
SNAP00000022676 6/11 Cross Hyb Matching Probes None
C01G5.7 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6518163-6518975(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37737 Hypothetical protein C01G5.7 [Caenorhabditis elegans] ref|NP_500990.2| C01G5.7 [Caenorhabditis elegans] 4.0E-51
blast CAE61526 Hypothetical protein CBG05429 [Caenorhabditis briggsae] 1.0E-34
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000022687 1 173-195
Sequence
Target Sequence 
>C. ELEGANS:182908_AT
gaatatcaagcaacagctacagcaatcgctatcaccacaaatcttccaaattgggcactt
ttagcagaaacacatttggtatatattcaggagcaaactttcttaactcataattctcat
cgattttcagacaaatttagtttctttttttttttcataaaaagcaacaaatcgcatgat
tttgtttggatacgtgatgaaatatcagttccattgcttgaaaccggagtcggaactctt
ccactacttcaagccgcacttccctcaattctctcaatttcccaaaatgatgacaaagtg
aaagaaagatatcgaaaagttttgaggatagcacaacttcaaattgaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATATCAAGCAACAGCTACAGCAA 653 325 25 Antisense
GCTACAGCAATCGCTATCACCACAA 282 303 40 Antisense
GCTATCACCACAAATCTTCCAAATT 19 305 52 Antisense
TCTTCCAAATTGGGCACTTTTAGCA 93 617 66 Antisense
GGGCACTTTTAGCAGAAACACATTT 372 493 77 Antisense
TATTCAGGAGCAAACTTTCTTAACT 170 663 108 Antisense
TTTCTTAACTCATAATTCTCATCGA 562 671 123 Antisense
TTCTCATCGATTTTCAGACAAATTT 567 691 138 Antisense
ATATCAGTTCCATTGCTTGAAACCG 693 19 226 Antisense
GCTTGAAACCGGAGTCGGAACTCTT 695 299 240 Antisense
GGATAGCACAACTTCAAATTGAACA 294 511 350 Antisense
Sequence Source Affymetrix Proprietary Database