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[182907_s_at]

Description ZK328.4 /REP_DB=WormBase Gene ID /WP=CE28182 /TR=Q23462 /GB=AAA91247.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 97      4grp_high_8_8 > 44      6grp_highest_nonorm > 92      6grp_total > 86      4grp_total > 51      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 171.9
(-0.7)
P 		237.9
(3)
P 		189.1
(0.3)
P 		130.6
(-3)
A 		107
B 128.1
(-3)
P 		168.5
(3)
P 		157.6
(1.4)
P 		161.1
(1.9)
P 		40
C 184.7
(3)
P 		172.5
(2.2)
P 		176.1
(2.5)
P 		89.6
(-3)
P 		95
avr 161.6
(0.1) 		193
(3) 		174.3
(1.3) 		127.1
(-3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 304
1 2 3 4 5 6 range
A 163.7
(-2.9)
P 		208.4
(-1.9)
P 		159.9
(-3)
P 		270.7
(-0.4)
P 		273
(-0.4)
P 		420.5
(3)
P 		261
B 172.3
(-3)
P 		243.7
(-1)
P 		263.1
(-0.5)
P 		247.1
(-0.9)
P 		295.2
(0.4)
P 		389.5
(3)
P 		217
C 200.2
(-3)
P 		229.3
(-2.3)
P 		228.8
(-2.3)
P 		305.8
(-0.6)
P 		319.5
(-0.3)
P 		464
(3)
P 		264
avr 178.7
(-3) 		227.1
(-1.8) 		217.3
(-2.1) 		274.5
(-0.7) 		295.9
(-0.1) 		424.7
(3) 		246
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 62.6
(3)
P 		51.6
(1.5)
P 		49.4
(1.2)
P 		19.1
(-3)
A 		44
B 40.8
(2.3)
P 		41.6
(3)
P 		36.5
(-1.2)
P 		34.3
(-3)
P 		7
C 61.1
(3)
P 		49.6
(1.5)
P 		61.4
(3)
P 		15.1
(-3)
P 		46
avr 54.8
(3) 		47.6
(1.7) 		49.1
(1.9) 		22.8
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 30.2
(-3)
P 		74.1
(0.6)
P 		34.8
(-2.6)
P 		68.7
(0.2)
P 		82.4
(1.3)
P 		102.4
(3)
P 		72
B 59.9
(-3)
P 		81.1
(-1.5)
P 		63.9
(-2.7)
P 		65.4
(-2.6)
P 		119.9
(1.2)
P 		145.3
(3)
P 		85
C 74.2
(-2)
P 		70
(-2.3)
P 		58.2
(-3)
P 		61.5
(-2.8)
P 		103.4
(-0.2)
P 		155.3
(3)
P 		97
avr 54.8
(-2.8) 		75.1
(-1.3) 		52.3
(-3) 		65.2
(-2.1) 		101.9
(0.6) 		134.3
(3) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182907_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7855
Sequence Type Exemplar sequence
Representative Public ID ZK328.4 NCBI
Target Description ZK328.4 /REP_DB=WormBase Gene ID /WP=CE28182 /TR=Q23462 /GB=AAA91247.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065906(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065906 NCBI Caenorhabditis elegans ZK328.4 (ZK328.4) mRNA, complete cds. 11/11 None
SNAP00000038056 ENSEMBL cdna:SNAP chromosome:CEL140:III:6006496:6008925:-1 11/11 None
GENEFINDER00000038066 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6006496:6008925:-1 11/11 None
ZK328.4 ENSEMBL cdna:known chromosome:CEL140:III:6006359:6009026:-1 gene:ZK328.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6006494-6008636(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK328.4
Entrez Gene 175850 Entrez gene
SwissProt Q23462 EMBL-EBI
WormBase CE28182 Wormbase
Functional Annotations
Ortholog
ID Title Organism
U133_X3P:HS.135167.0.A1_3P_AT acidic repeat containing hs
HG-U133_PLUS_2:238825_AT acidic repeat containing hs
HG-U133B:238825_AT acidic repeat containing hs
HG-U95D:78786_AT acidic repeat containing hs
Protein Similarities
Method ID Description E-Value
blast AAA91247 Hypothetical protein ZK328.4 [Caenorhabditis elegans] ref|NP_498307.1| ZK328.4 [Caenorhabditis elegans] 0.0
blast CAE64341 Hypothetical protein CBG09024 [Caenorhabditis briggsae] 1.0E-169
blast CAE64341 Hypothetical protein CBG09024 [Caenorhabditis briggsae] 1.0E-164
blast CAE64341 Hypothetical protein CBG09024 [Caenorhabditis briggsae] 1.0E-160
blast XP_792984 PREDICTED: similar to ACRC protein [Strongylocentrotus purpuratus] 4.0E-30
Sequence
Target Sequence 
>C. ELEGANS:182907_S_AT
aacgcacgccttcgaaaatcagctggccaatgcagaaatcattcaaatggaaacagcact
gtcgaaatgtcaccagtagtatgtacaactgctgaacgagtacgagatacactgatccat
gaactgtgtcatgcagcaacatgggtggtcgacaggcttcataaagaaggtcatggccca
ggatggaagagatggggagctcgatgctcttcggtgttcaagtcacttccatttattgaa
agatgtcatagttatgagattgaggcaaagttcttctatgtttgtgagaaagatggatgt
gatgtagaaataaagcgtcaatcgaaatctctcgacacctcacgaaaagcgtgcggaaga
tgttttggcagattcattctctaccgttattgccgccgaacgaatactcgaatccgtatt
gaagatcctaaagccaagccggttggtccaattctttccaattcctcaaagccatctcca
ccagctcctcgtcgtattgtcagtgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGCACGCCTTCGAAAATCAGCTG 593 145 787 Antisense
GAAACAGCACTGTCGAAATGTCACC 615 355 836 Antisense
GCAACATGGGTGGTCGACAGGCTTC 204 319 922 Antisense
GAGATGGGGAGCTCGATGCTCTTCG 32 397 975 Antisense
CGATGCTCTTCGGTGTTCAAGTCAC 94 249 988 Antisense
GTCAATCGAAATCTCTCGACACCTC 295 463 1103 Antisense
AGATTCATTCTCTACCGTTATTGCC 18 67 1156 Antisense
GCCGCCGAACGAATACTCGAATCCG 585 285 1178 Antisense
GAAGATCCTAAAGCCAAGCCGGTTG 249 335 1207 Antisense
GTTGGTCCAATTCTTTCCAATTCCT 250 435 1228 Antisense
AGCTCCTCGTCGTATTGTCAGTGAG 496 79 1269 Antisense
Sequence Source Affymetrix Proprietary Database