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[182906_at]

Description F29B9.7 /REP_DB=WormBase Gene ID /WP=CE09785 /TR=Q9GYI6 /GB=AAF99919.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 2.9
(-3)
A 		8.8
(-2.2)
A 		9.5
(-2.2)
A 		49.8
(3)
A 		47
B 5.2
(-2.6)
A 		9.2
(-2.1)
A 		2.4
(-3)
A 		46.3
(3)
A 		44
C 4.1
(-2.9)
A 		15.5
(-1.8)
A 		3
(-3)
A 		67.4
(3)
A 		64
avr 4.1
(-3) 		11.2
(-2.2) 		5
(-2.9) 		54.5
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 9.4
(-2.6)
A 		1.6
(-3)
A 		21
(-1.9)
A 		6.4
(-2.7)
A 		51.9
(-0.1)
A 		106.5
(3)
P 		105
B 10.5
(-3)
A 		18.2
(-2.4)
A 		38
(-0.8)
A 		21.6
(-2.1)
A 		65.7
(1.5)
M 		84.2
(3)
P 		74
C 17.1
(-2.1)
A 		3.8
(-3)
A 		7.2
(-2.8)
A 		47.3
(0)
A 		90.7
(3)
A 		61.7
(1)
P 		87
avr 12.3
(-2.7) 		7.9
(-3) 		22.1
(-1.9) 		25.1
(-1.6) 		69.4
(1.8) 		84.1
(3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1
(-3)
A 		1.9
(-2.1)
A 		2.5
(-1.6)
A 		7.3
(3)
A 		6
B 1.7
(-2.3)
A 		2.3
(-1.9)
A 		0.6
(-3)
A 		9.9
(3)
A 		9
C 1.3
(-2.8)
A 		4.4
(-1)
A 		1
(-3)
A 		11.4
(3)
A 		10
avr 1.3
(-3) 		2.9
(-1.8) 		1.4
(-2.9) 		9.5
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 1.7
(-2.7)
A 		0.6
(-3)
A 		4.6
(-2.1)
A 		1.6
(-2.8)
A 		15.7
(0.6)
A 		25.9
(3)
P 		25
B 3.7
(-3)
A 		6
(-2.5)
A 		9.2
(-1.8)
A 		5.7
(-2.6)
A 		26.7
(2)
M 		31.4
(3)
P 		28
C 6.3
(-1.9)
A 		1.2
(-3)
A 		1.8
(-2.9)
A 		9.5
(-1.2)
A 		29.4
(3)
A 		20.6
(1.1)
P 		28
avr 3.9
(-2.7) 		2.6
(-3) 		5.2
(-2.3) 		5.6
(-2.2) 		23.9
(2.5) 		26
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182906_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10923
Sequence Type Exemplar sequence
Representative Public ID F29B9.7 NCBI
Target Description F29B9.7 /REP_DB=WormBase Gene ID /WP=CE09785 /TR=Q9GYI6 /GB=AAF99919.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068202(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068202 NCBI Caenorhabditis elegans F29B9.7 (F29B9.7) mRNA, complete cds. 11/11 None
GENEFINDER00000034779 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4649864:4650594:1 11/11 None
F29B9.7 ENSEMBL cdna:known chromosome:CEL140:IV:4649864:4650594:1 gene:F29B9.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034762 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4649869-4650600(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F29B9.7
Entrez Gene 185108 Entrez gene
SwissProt Q9GYI6 EMBL-EBI
WormBase CE09785 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500603 F29B9.7 [Caenorhabditis elegans] gb|AAF99919.1| Hypothetical protein F29B9.7 [Caenorhabditis elegans] 8.0E-74
blast CAE58557 Hypothetical protein CBG01719 [Caenorhabditis briggsae] 9.0E-55
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500603.1 1 28-50
F29B9.7 1 28-50
GENEFINDER00000034779 1 28-50
Sequence
Target Sequence 
>C. ELEGANS:182906_AT
gagtacagcaacagacgaaccacctaatcaattgtttttgtcatcgttgcttttcttgag
ctctgcgatttgttctctattcgcagcttcaattctagttcgtagttttccatttttcgg
ttctactctctctttggtgatcattctagtaactagagaatggaataggatatacggtgg
acttttgagtccaaatctgaaagcaacaatcaactattcgaccgttatgagagatcacag
agaatacattccgttatacgacatggactggttgttcggaggaagatacaagccgtacta
ttatggatgcacgggaccttcgaacaatccggacatggagagaacgcctgatgaccccgg
aagtcgttcgccgacgaaagagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTACAGCAACAGACGAACCACCT 245 389 63 Antisense
CATCGTTGCTTTTCTTGAGCTCTGC 456 211 104 Antisense
GAGCTCTGCGATTTGTTCTCTATTC 620 387 120 Antisense
TTCGCAGCTTCAATTCTAGTTCGTA 632 695 142 Antisense
TCTACTCTCTCTTTGGTGATCATTC 186 615 184 Antisense
GCAACAATCAACTATTCGACCGTTA 283 319 265 Antisense
TACGACATGGACTGGTTGTTCGGAG 284 647 319 Antisense
TTATGGATGCACGGGACCTTCGAAC 549 679 363 Antisense
GACCTTCGAACAATCCGGACATGGA 79 383 377 Antisense
CATGGAGAGAACGCCTGATGACCCC 376 209 396 Antisense
GGAAGTCGTTCGCCGACGAAAGAGC 644 529 421 Antisense
Sequence Source Affymetrix Proprietary Database