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[182905_at]

Description F38E11.3 /REP_DB=WormBase Gene ID /WP=CE26624 /TR=Q20166 /GB=CAA92772.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 51      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 62      6grp_total > 30      4grp_total > 60      6grp_highest_sub > 03      6grp_cgc > 83      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 203
1 2 3 4 range
A 319.9
(1.7)
P 		295.7
(1)
P 		360.2
(3)
P 		167.9
(-3)
P 		192
B 270.6
(1)
P 		300.7
(2.2)
P 		318.8
(3)
P 		177.3
(-3)
P 		142
C 326
(1.6)
P 		336.9
(1.9)
P 		371.2
(3)
P 		183.3
(-3)
P 		188
avr 305.5
(1.5) 		311.1
(1.7) 		350.1
(3) 		176.2
(-3) 		174

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 707
1 2 3 4 5 6 range
A 360.2
(-1.3)
P 		509.3
(-0)
P 		864.3
(3)
P 		642.4
(1.1)
P 		324.1
(-1.6)
P 		157.3
(-3)
P 		707
B 412.6
(-0.9)
P 		719
(2.8)
P 		733.8
(3)
P 		629.8
(1.7)
P 		408.6
(-0.9)
P 		237.9
(-3)
P 		496
C 318.5
(-1.8)
P 		715.6
(2.5)
P 		758.9
(3)
P 		695.3
(2.3)
P 		330.2
(-1.6)
P 		203.6
(-3)
P 		555
avr 363.8
(-1.3) 		648
(1.6) 		785.7
(3) 		655.8
(1.7) 		354.3
(-1.4) 		199.6
(-3) 		586
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 116.5
(3)
P 		64.2
(-0.4)
P 		94.2
(1.5)
P 		24.6
(-3)
P 		92
B 86.3
(3)
P 		74.3
(1.5)
P 		73.9
(1.5)
P 		37.8
(-3)
P 		49
C 107.9
(1.7)
P 		96.9
(1)
P 		129.4
(3)
P 		30.9
(-3)
P 		99
avr 103.6
(3) 		78.5
(0.9) 		99.2
(2.6) 		31.1
(-3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 66.4
(-1.9)
P 		181.1
(2.7)
P 		188.2
(3)
P 		162.9
(2)
P 		97.8
(-0.6)
P 		38.3
(-3)
P 		150
B 143.6
(-0.8)
P 		239.3
(3)
P 		178.2
(0.6)
P 		166.8
(0.1)
P 		166
(0.1)
P 		88.7
(-3)
P 		151
C 118
(-1)
P 		218.4
(3)
P 		193.1
(2)
P 		139.8
(-0.1)
P 		106.9
(-1.5)
P 		68.2
(-3)
P 		150
avr 109.3
(-1.2) 		212.9
(3) 		186.5
(1.9) 		156.5
(0.7) 		123.6
(-0.6) 		65.1
(-3) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182905_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8755
Sequence Type Exemplar sequence
Representative Public ID F38E11.3 NCBI
Target Description F38E11.3 /REP_DB=WormBase Gene ID /WP=CE26624 /TR=Q20166 /GB=CAA92772.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069268(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069268 NCBI Caenorhabditis elegans CyPIn (guanine aminohydrolase) homolog family member (cpi-1) (cpi-1) mRNA, complete cds. 11/11 None
SNAP00000022711 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9451317:9453244:1 11/11 None
GENEFINDER00000022718 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9451317:9453244:1 11/11 None
F38E11.3 ENSEMBL cdna:known chromosome:CEL140:IV:9451317:9453244:1 gene:F38E11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9451322-9453250(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cpi-1
Ensembl F38E11.3
Entrez Gene 185473 Entrez gene
SwissProt Q20166 EMBL-EBI
WormBase CE26624 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92772 Hypothetical protein F38E11.3 [Caenorhabditis elegans] ref|NP_501669.1| CyPIn (guanine aminohydrolase) homolog family member (cpi-1) [Caenorhabditis elegans] 0.0
blast CAE74013 Hypothetical protein CBG21661 [Caenorhabditis briggsae] 0.0
blast AAC15070 SdeB [Myxococcus xanthus] 1.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR006680 EMBL-EBI Amidohydrolase 4.6E-74
Pfam IPR006680 EMBL-EBI Amidohydrolase 3.8E-68
Sequence
Target Sequence 
>C. ELEGANS:182905_AT
tttcactgctgttcattcaacttttacaccagcaaacaatatgctcctgttctcaaagct
tggcgccaatgtttcaatttgtccatgcacagagggataccttggagacggaatccctcg
aatcaacgaaagcttgaaaatcagttttggtactgattgcaataatcgaatttgtttttt
ggaagaaatgcgatgggcgtgtttttcgcaacagatgttaaacaattctcgaagtgtttg
tggcctttcgccagaaaaactacttctatgcgccacaatcgacggagcccgtgctttatc
tttaacttcaaaaactggaagtcttgaggtcggaaagtactttgacgcaatttcgttttc
tctggattctccacttcttgaaaactctcttgctgatactttgattgactctcttgtgct
ctcagctggcaatag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCACTGCTGTTCATTCAACTTTT 252 673 807 Antisense
TGCTCCTGTTCTCAAAGCTTGGCGC 295 581 848 Antisense
GGAGACGGAATCCCTCGAATCAACG 173 513 910 Antisense
GATGGGCGTGTTTTTCGCAACAGAT 657 405 998 Antisense
TCGAAGTGTTTGTGGCCTTTCGCCA 147 599 1035 Antisense
CTTCTATGCGCCACAATCGACGGAG 157 221 1069 Antisense
AATCGACGGAGCCCGTGCTTTATCT 94 169 1083 Antisense
TTCTCTGGATTCTCCACTTCTTGAA 239 693 1164 Antisense
GAAAACTCTCTTGCTGATACTTTGA 174 355 1186 Antisense
GATACTTTGATTGACTCTCTTGTGC 592 423 1201 Antisense
CTCTTGTGCTCTCAGCTGGCAATAG 703 229 1217 Antisense
Sequence Source Affymetrix Proprietary Database