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[182904_at]

Description W03D2.6 /REP_DB=WormBase Gene ID /WP=CE14516 /TR=O02118 /GB=AAC48261.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 44      6grp_total > 0      4grp_total > 61      6grp_total_sub > Hat      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 159.2
(3)
P 		111.4
(1.1)
A 		128.9
(1.8)
P 		11.9
(-3)
A 		147
B 123.2
(2.4)
P 		124.6
(2.5)
P 		135.9
(3)
P 		5.1
(-3)
A 		131
C 167.5
(3)
P 		103.2
(0.2)
P 		120.5
(0.9)
P 		30.6
(-3)
A 		137
avr 150
(3) 		113.1
(1.3) 		128.4
(2) 		15.9
(-3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 335
1 2 3 4 5 6 range
A 29.2
(-3)
A 		271.5
(2.1)
P 		268.8
(2)
P 		264.9
(2)
P 		253.5
(1.7)
P 		314.3
(3)
P 		285
B 158.4
(-2.1)
P 		267.6
(2.9)
P 		137.7
(-3)
P 		205.7
(0.1)
P 		227.6
(1.1)
P 		269.6
(3)
P 		132
C 97.2
(-3)
P 		364.4
(3)
P 		225.5
(-0.1)
P 		233.1
(0.1)
P 		241.3
(0.2)
P 		266.9
(0.8)
P 		267
avr 94.9
(-3) 		301.2
(3) 		210.7
(0.4) 		234.6
(1.1) 		240.8
(1.2) 		283.6
(2.5) 		206
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 58
(3)
P 		24.2
(-0.6)
A 		33.7
(0.4)
P 		1.7
(-3)
A 		56
B 39.3
(3)
P 		30.8
(1.7)
P 		31.5
(1.8)
P 		1.1
(-3)
A 		38
C 55.5
(3)
P 		29.7
(-0.1)
P 		42
(1.4)
P 		5.2
(-3)
A 		50
avr 50.9
(3) 		28.2
(0.2) 		35.7
(1.1) 		2.7
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 5.4
(-3)
A 		96.6
(3)
P 		58.5
(0.5)
P 		67.2
(1.1)
P 		76.5
(1.7)
P 		76.5
(1.7)
P 		91
B 55.1
(-1.1)
P 		89.1
(2)
P 		33.4
(-3)
P 		54.5
(-1.1)
P 		92.5
(2.3)
P 		100.5
(3)
P 		67
C 36
(-3)
P 		111.2
(3)
P 		57.4
(-1.3)
P 		46.9
(-2.1)
P 		78.1
(0.4)
P 		89.3
(1.3)
P 		75
avr 32.2
(-3) 		99
(3) 		49.8
(-1.4) 		56.2
(-0.8) 		82.4
(1.5) 		88.8
(2.1) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182904_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10563
Sequence Type Exemplar sequence
Representative Public ID W03D2.6 NCBI
Target Description W03D2.6 /REP_DB=WormBase Gene ID /WP=CE14516 /TR=O02118 /GB=AAC48261.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068068(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068068 NCBI Caenorhabditis elegans W03D2.6 (W03D2.6) mRNA, complete cds. 11/11 None
SNAP00000027040 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4056659:4058236:-1 11/11 None
GENEFINDER00000027048 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4056579:4063097:-1 11/11 None
W03D2.6 ENSEMBL cdna:known chromosome:CEL140:IV:4056662:4058295:-1 gene:W03D2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4056584-4057715(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W03D2.6
Entrez Gene 177163 Entrez gene
SwissProt O02118 EMBL-EBI
WormBase CE33718 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48261 Hypothetical protein W03D2.6 [Caenorhabditis elegans] ref|NP_500469.3| W03D2.6 [Caenorhabditis elegans] 1.0E-132
blast AAC48261 Hypothetical protein W03D2.6 [Caenorhabditis elegans] ref|NP_500469.3| W03D2.6 [Caenorhabditis elegans] 9.0E-80
blast AAC48261 Hypothetical protein W03D2.6 [Caenorhabditis elegans] ref|NP_500469.3| W03D2.6 [Caenorhabditis elegans] 3.0E-79
blast AAB94152 Hypothetical protein R07C12.3 [Caenorhabditis elegans] ref|NP_500494.1| R07C12.3 [Caenorhabditis elegans] 2.0E-42
blast AAV34784 Hypothetical protein Y54G2A.8b [Caenorhabditis elegans] ref|NP_001023508.1| Y54G2A.8b [Caenorhabditis elegans] 3.0E-42
blast AAB94152 Hypothetical protein R07C12.3 [Caenorhabditis elegans] ref|NP_500494.1| R07C12.3 [Caenorhabditis elegans] 6.0E-37
blast AAB94150 Hypothetical protein R07C12.1 [Caenorhabditis elegans] ref|NP_500497.1| R07C12.1 [Caenorhabditis elegans] 5.0E-33
blast AAB94152 Hypothetical protein R07C12.3 [Caenorhabditis elegans] ref|NP_500494.1| R07C12.3 [Caenorhabditis elegans] 1.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR008597 EMBL-EBI Destabilase 8.8E-39
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500469.3 1 78-100
W03D2.6 1 78-100
Sequence
Target Sequence 
>C. ELEGANS:182904_AT
gttccactttgcgggtcggtagtgattatgtttttgagccgttttccaaatgaaaccgat
attgctcgaacagtagccaaagttcgtcagtataacggagtcgttagcgtacttttgccg
ttggattcaacaggcggattacagccaaagacaatgtacaacgttgcttcaaagacaaat
gggatcgctgcttttgagtggagaaacaactattccgaagtaaataaagtttgtaaccat
tcccctcccgatggtgcattcgagtcaacttctgttgtatggtacaacccacaatcttct
ctttcaagcaatttcacaaccaacactgataatcttgaaatcctctacaacggaactttc
gactctgttttattcgcttttgatgacaaggttttcaacatgacttttgattactcgtat
gcggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCCACTTTGCGGGTCGGTAGTGA 19 439 43 Antisense
GATTATGTTTTTGAGCCGTTTTCCA 701 425 66 Antisense
ACAGTAGCCAAAGTTCGTCAGTATA 605 107 112 Antisense
TCGTTAGCGTACTTTTGCCGTTGGA 9 303 143 Antisense
GGGATCGCTGCTTTTGAGTGGAGAA 507 495 223 Antisense
GATGGTGCATTCGAGTCAACTTCTG 508 407 292 Antisense
GTATGGTACAACCCACAATCTTCTC 300 455 319 Antisense
TTCTCTTTCAAGCAATTTCACAACC 270 693 339 Antisense
TACAACGGAACTTTCGACTCTGTTT 207 643 388 Antisense
ACTCTGTTTTATTCGCTTTTGATGA 104 101 404 Antisense
GACTTTTGATTACTCGTATGCGGAT 571 371 444 Antisense
Sequence Source Affymetrix Proprietary Database