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[182903_at]

Description ZK418.6 /REP_DB=WormBase Gene ID /WP=CE00808 /TR=Q23484 /GB=AAA50690.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 20      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 90.6
(2.6)
A 		52.8
(-0.5)
A 		23.1
(-3)
A 		94.8
(3)
M 		72
B 26.3
(-3)
A 		27.5
(-2.9)
A 		31
(-2.6)
A 		91.7
(3)
M 		65
C 67.4
(-1.1)
A 		95.8
(2.1)
A 		50.3
(-3)
A 		103.4
(3)
A 		53
avr 61.4
(-0.4) 		58.7
(-0.7) 		34.8
(-3) 		96.6
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 6.7
(-3)
A 		53
(-0.4)
A 		49.8
(-0.6)
A 		58
(-0.1)
A 		91.1
(1.8)
A 		112.9
(3)
M 		106
B 25.8
(-3)
A 		38.8
(-2.1)
A 		41.1
(-2)
A 		34.4
(-2.4)
A 		107
(2.3)
A 		117.1
(3)
P 		91
C 11.8
(-3)
A 		65.9
(-0.3)
A 		26.9
(-2.2)
A 		78.7
(0.3)
A 		85.3
(0.7)
A 		132.2
(3)
P 		120
avr 14.8
(-3) 		52.6
(-0.9) 		39.3
(-1.6) 		57
(-0.6) 		94.5
(1.5) 		120.7
(3) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 33
(3)
A 		11.5
(-1.8)
A 		6
(-3)
A 		13.9
(-1.2)
M 		27
B 8.4
(-2.2)
A 		6.8
(-3)
A 		7.2
(-2.8)
A 		19.5
(3)
M 		13
C 22.3
(-0.1)
A 		27.5
(3)
A 		17.5
(-2.9)
A 		17.4
(-3)
A 		10
avr 21.2
(3) 		15.3
(-0.2) 		10.2
(-3) 		16.9
(0.7) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 1.2
(-3)
A 		18.9
(1)
A 		10.8
(-0.8)
A 		14.7
(0.1)
A 		27.5
(3)
A 		27.5
(3)
M 		26
B 9
(-3)
A 		12.9
(-2.3)
A 		10
(-2.8)
A 		9.1
(-3)
A 		43.5
(3)
A 		43.7
(3)
P 		35
C 4.4
(-3)
A 		20.1
(-0.6)
A 		6.8
(-2.6)
A 		15.8
(-1.3)
A 		27.6
(0.5)
A 		44.2
(3)
P 		40
avr 4.9
(-3) 		17.3
(-0.8) 		9.2
(-2.2) 		13.2
(-1.5) 		32.9
(2) 		38.5
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182903_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7837
Sequence Type Exemplar sequence
Representative Public ID ZK418.6 NCBI
Target Description ZK418.6 /REP_DB=WormBase Gene ID /WP=CE00808 /TR=Q23484 /GB=AAA50690.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066144(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066144 NCBI Caenorhabditis elegans ZK418.6 (ZK418.6) mRNA, complete cds. 11/11 None
SNAP00000003343 ENSEMBL cdna:SNAP chromosome:CEL140:III:7074210:7076053:-1 11/11 None
GENEFINDER00000003357 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7074210:7078760:-1 11/11 None
ZK418.6 ENSEMBL cdna:known chromosome:CEL140:III:7074210:7078760:-1 gene:ZK418.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7074207-7078758(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK418.6
Entrez Gene 191317 Entrez gene
SwissProt Q23484 EMBL-EBI
WormBase CE00808 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50690 Hypothetical protein ZK418.6 [Caenorhabditis elegans] ref|NP_498545.1| ZK418.6 [Caenorhabditis elegans] 0.0
blast AAA50690 Hypothetical protein ZK418.6 [Caenorhabditis elegans] ref|NP_498545.1| ZK418.6 [Caenorhabditis elegans] 1.0E-177
blast CAE70076 Hypothetical protein CBG16517 [Caenorhabditis briggsae] 1.0E-165
blast CAE70077 Hypothetical protein CBG16518 [Caenorhabditis briggsae] 1.0E-142
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 6.0E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498545.1 8 63-85,105-127,140-162,183-205,225-247,277-299,330-352,791-813
ZK418.6 8 63-85,105-127,140-162,183-205,225-247,277-299,330-352,791-813
SNAP00000003343 1 344-366
GENEFINDER00000003357 8 63-85,105-127,140-162,183-205,225-247,277-299,330-352,768-790
Sequence
Target Sequence 
>C. ELEGANS:182903_AT
atttgaagatgctccgaaacctgcctggccaaatcggaatgtctgagctggagccggagg
accttgaagttacaccggacccacccgaattcattccaccccggtccccaggtctccaaa
tcatgaagccaccgcccgtatcgcctccgtctaacattcccgagctcatccatcatcaac
cggcacttgtcacacaacccgaatcaagaccagatccaaatttgatcattttgccggctc
caactgatgttcatccgccaaagtccccggtgcaccatgttatcaagcaagaatccatga
aggacatcccaccgggatcacctgcatctccaggagcatggtctggctccaatagctcgt
tgatctttatgccatcttctactcaagcaccggaacattatgctattccatccgtttcca
atgttttgatgtttcgtaaaatggaacacattttctacagctcggaatccaactggtggt
tgctcgtggcactggtgatgctcacaatttttgcgtaccgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTGAAGATGCTCCGAAACCTGCC 274 17 1934 Antisense
AACCTGCCTGGCCAAATCGGAATGT 182 147 1951 Antisense
CTCCAACTGATGTTCATCCGCCAAA 114 237 2171 Antisense
GAATCCATGAAGGACATCCCACCGG 272 329 2224 Antisense
ATCACCTGCATCTCCAGGAGCATGG 147 29 2250 Antisense
GTCTGGCTCCAATAGCTCGTTGATC 150 471 2274 Antisense
GTTGATCTTTATGCCATCTTCTACT 212 439 2292 Antisense
ATCTTCTACTCAAGCACCGGAACAT 445 31 2307 Antisense
AACATTATGCTATTCCATCCGTTTC 90 139 2327 Antisense
TTGCTCGTGGCACTGGTGATGCTCA 476 703 2413 Antisense
TGCTCACAATTTTTGCGTACCGCTC 7 581 2432 Antisense
Sequence Source Affymetrix Proprietary Database